Follow me on X: https://x.com/MaziyarPanahi
head to the @hf.co collection, pick a model, and try it out.
share feedback, and tell me your clinical/biomedical NER needs, your use cases will guide the roadmap.
huggingface.co/collections/...
head to the @hf.co collection, pick a model, and try it out.
share feedback, and tell me your clinical/biomedical NER needs, your use cases will guide the roadmap.
huggingface.co/collections/...
BC4CHEMD,
BC5CDR (chem + disease),
BC2GM,
JNLPBA,
BioNLP 2013 CG,
GELLUS,
FSU,
CLL,
Anatomy (AnatEM),
Linnaeus,
Species‑800,
NCBI‑Disease.
pick a size to match latency/accuracy needs and your deployment constraints.
🧵 (5/6)
BC4CHEMD,
BC5CDR (chem + disease),
BC2GM,
JNLPBA,
BioNLP 2013 CG,
GELLUS,
FSU,
CLL,
Anatomy (AnatEM),
Linnaeus,
Species‑800,
NCBI‑Disease.
pick a size to match latency/accuracy needs and your deployment constraints.
🧵 (5/6)
domain‑adapted for clinical/biomedical text while keeping flexible zero‑shot behavior.
seamless with gliner and the @hf.co ecosystem.
🧵 (4/6)
domain‑adapted for clinical/biomedical text while keeping flexible zero‑shot behavior.
seamless with gliner and the @hf.co ecosystem.
🧵 (4/6)
define labels at inference, no retraining.
go from “disease” to “gene mutation” to “device” by changing the label list.
perfect for shifting schemas across hospitals, projects,
and ontologies without new annotation cycles.
🧵 (3/6)
define labels at inference, no retraining.
go from “disease” to “gene mutation” to “device” by changing the label list.
perfect for shifting schemas across hospitals, projects,
and ontologies without new annotation cycles.
🧵 (3/6)
across 91 base→fine‑tuned pairs,
average F1 jumps from 0.519 → 0.809 (+0.290, ~80% relative).
consistent gains for chemicals, diseases, anatomy, genes/proteins, and oncology corpora.
🧵 (2/6)
across 91 base→fine‑tuned pairs,
average F1 jumps from 0.519 → 0.809 (+0.290, ~80% relative).
consistent gains for chemicals, diseases, anatomy, genes/proteins, and oncology corpora.
🧵 (2/6)
Check it out the blog post: huggingface.co/blog/Maziyar...
Check it out the blog post: huggingface.co/blog/Maziyar...
Plus, they integrate seamlessly with Hugging Face and PyTorch.
Plus, they integrate seamlessly with Hugging Face and PyTorch.
- I use personas to have different responses
- randomness of the temp and seed in combination
I also create 2-3 responses so I can rate them later and only keep the better one.
- huggingface.co/datasets/pro...
- huggingface.co/datasets/arg...
- I use personas to have different responses
- randomness of the temp and seed in combination
I also create 2-3 responses so I can rate them later and only keep the better one.
- huggingface.co/datasets/pro...
- huggingface.co/datasets/arg...