Microbiome
@microbiomej.bsky.social
180 followers 350 following 25 posts
A family of open access journals from BioMed Central (BMC) that seek to unite investigators conducting microbiome research in environmental, agricultural, and biomedical arenas🦠
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microbiomej.bsky.social
In #Microbiome

🔍Evaluating urine volume & host depletion methods to enable genome-resolved metagenomics of the urobiome

🚨Revealing evidence of urea & environment chemical (long-chain alkane) degradation genes in urine microbes

👉 doi.org/p75c
Reposted by Microbiome
malariajournal.bsky.social
Global Change, Pest Invasions, and Migration: Challenges for Rural Communities.

📅 Friday, October 17th, 2025
⏰ 13:00 PM CET | 14:00 PM GMT+1 | 09:00 AM EST
Register here: cassyni.com/events/PuudG...

The event will feature presentations by Antonio Biondi and Dr Samira Abuelgasim Mohamed
microbiomej.bsky.social
In #EnvironmentalMicrobiome

🔍Exploring fungi species composition transition during a 40-year urbanization in a subtropical city of China

📣Soil fungi in urban areas had significantly lower Chao1 & phylogenetic diversity than that of a natural ecosystem

👉 doi.org/p75d
microbiomej.bsky.social
In #Microbiome🦠

🔍Decoding the genetic drivers of marine bacterial blooms through comparative genomics

📢Fast-growing copiotrophs harbor genes that boost stress resistance, nutrient uptake, biofilm formation & rapid replication

Read more👉 doi.org/p75b
microbiomej.bsky.social
In #AnimalMicrobiome

🔍Investigating the metabolic interplay between Endozoicomonas and coral hosts🪸

🚨Highlighting possible roles in nutrient cycling, reproductive health, and stress resilience

Read more👉 doi.org/p7c3
microbiomej.bsky.social
In #Microbiome:

🦠Exploring how the microbiome influences fertility & preconception health

🚨Offering a systems-level lens through which to understand & improve reproductive health by linking diet, immunity, metabolism & hormonal signaling

Read more👉 doi.org/p7cw
microbiomej.bsky.social
In #EnvironmentalMicrobiome:

🔍Using metatranscriptomics to examine the seasonal dynamics of B1 acquisition strategies in Baltic Sea bacterioplankton

📣Observing elevated B1-related gene expression in summer, coinciding with increased temperatures & bacterial activity

Read more▶️ doi.org/p7cx
Pronounced seasonal dynamics in transcription of vitamin B1 acquisition strategies diverge among Baltic Sea bacterioplankton - Environmental Microbiome
Background Vitamin B1 (thiamin) is essential to life; yet little is known of the regulation of its availability in marine environments or how it varies seasonally. Since microbes are the key synthesizers of the vitamin in marine environments, we here used metatranscriptomics to examine the seasonal dynamics of B1 acquisition strategies (including both uptake and synthesis pathways) in Baltic Sea bacterioplankton. Results Elevated B1-related gene expression was observed in summer, coinciding with increased temperatures and bacterial activity and decreased nutrient availability. Different bacterial taxa exhibited distinct B1 acquisition strategies. We identified filamentous Cyanobacteria of the order Nostocales as critical to sustaining B1 production during summer, potentially compensating for limited synthesis in heterotrophic bacteria, especially for 4-amino-5-hydroxymethylpyrimidine (HMP) synthesis. Also, Pelagibacterales accounted for major portions of the community transcription, primarily taking up and salvaging the B1 precursor HMP during summer. This study highlights the partitioning of B1 synthesis, salvage, and uptake among microbial taxa, underscoring that transcriptional activity was more dynamic over time than changes in the genomic potential. Conclusions We emphasize the influence of environmental conditions on microbial community dynamics and B1 cycling in general, and the potential implications of global change-induced increases in filamentous Cyanobacteria blooms on vitamin food web transfer in particular.
doi.org
microbiomej.bsky.social
In #Microbiome🦠:

🔍Exploring how maternal microbiome transmission impacts next generation health

📣Diet alters maternal microbiome increasing offspring susceptibility to metabolic, inflammatory & immune-related diseases

▶️Find out more: doi.org/p7cv #OpenAcess
microbiomej.bsky.social
In #Microbiome🦠: A closer look at unique bacteria inhabiting NASA cleanrooms

🔍Researchers identify 26 novel bacterial species

📣These microbes form biofilms, resist various stressors & offer biotechnological potential

▶️Find out more: doi.org/g9h7sx #OpenAcess
New insights into novel stress-resistant bacteria discovered in NASA spacecraft assembly cleanrooms
YouTube video by AJE Video Bytes
www.youtube.com
microbiomej.bsky.social
In #EnvironmentalMicrobiome

🔍Characterising plastisphere communities associated with a wastewater treatment plant in New Zealand

📢No substrate-specific microbial communities were found among glass & polymer types regardless of artificial aging

👉http://doi.org/pvb5
#plastics
microbiomej.bsky.social
In #Microbiome

🔍Investigating the impact of glufosinate (GLU) on chili plant growth & rhizosphere microbial communities

🚨Jasmonic acid acts as a chemoattractant, promoting bacterial growth & metabolic activity to degrade GLU residues in soil

👉http://doi.org/pvb9
microbiomej.bsky.social
In #AnimalMicrobiome

🔍A randomized controlled dietary feeding trial assessing the effect of high levels of dietary zinc on the microbiomes of a gestating sow & her neonatal piglets

📢Sows had significantly higher alpha diversity at farrowing

👉http://doi.org/pvb4
Reposted by Microbiome
earlhaminst.bsky.social
From the prenatal #immunesystem to #microbial life in the ocean - read about what the #singlecell and #spatial community are working on from this year's #SingleCell and #Spatial Symposium. 🦠🩺🌱🫁
Integrating single-cell and spatial genomics across the tree of life
New methods for visualising and sequencing genetic material from a single cell are allowing scientists to explore fundamental questions about living systems.
buff.ly
microbiomej.bsky.social
Inspired by interest from our readers and authors, we are casting our eyes out into the oceans this month.
Here are some of the marine microbiome papers published recently across the Microbiome Family tinyurl.com/54rs4a93 @jacquesravel.bsky.social @joyemwatts.bsky.social
microbiomej.bsky.social
A vacancy in @bioinf.bsky.social team -2.5 year post on food-associated changes in gut microbiomes.... please see original post for more details
bioinf.bsky.social
Happy to announce that we have a new 2.5 year post on food-associated changes in gut microbiomes. We are looking for a strong bioinformatician with experience in metagenomics, metabolic modelling, functional genomics, system biology. (application deadline 20.7.25)
quadram.ac.uk/vacancies/me...
Fig from https://www.nature.com/articles/s41531-025-00885-5
Reposted by Microbiome
bioinf.bsky.social
Happy to announce that we have a new 2.5 year post on food-associated changes in gut microbiomes. We are looking for a strong bioinformatician with experience in metagenomics, metabolic modelling, functional genomics, system biology. (application deadline 20.7.25)
quadram.ac.uk/vacancies/me...
Fig from https://www.nature.com/articles/s41531-025-00885-5