Miklos Bognar
@miklosbognar.bsky.social
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miklosbognar.bsky.social
We think that research fields where notable "ground truth" effects are investigated (such as the CSE), a similar systematic exploration of the analytical space is necessary to inform the field's community about common arbitrary decision combinations that can lead to higher false findings.
miklosbognar.bsky.social
Based on these results we think that the risks of multiple testing (even with common corrections) are higher than expected, thus sticking to a preregistered analytical protocol is immensely recommended.
miklosbognar.bsky.social
in repeated-measures ANOVAs, FPRs were not affected by outlier filtering methods; thus, when severe outlier filtering is justified, repeated-measures ANOVA is a recommended choice for hypothesis testing.
miklosbognar.bsky.social
In linear models, type I error rates also increase proportionally to the severity of outlier filters. This inflation of FPR poses a significant risk of false findings; therefore, we do not recommend to use linear mixed models along with severe outlier exclusion techniques, especially on skewed data.
miklosbognar.bsky.social
Results showed that certain analytical choice combinations (outlier filtering; data transformation; hypothesis testing method) led to highly inflated false positive rates (type I error rates). Decision pathways where linear mixed-effect models were used were especially impacted.
Model TPRs on large effect size datasets on different participant numbers, with the 3SD outlier filtering method. 

True positive rate is indicated on the y-axis, while false positive rate is indicated on the x-axis. Hypothesis testing models are shown with different colors, and numbers on the plot indicate different sample sizes. An assumed maximum FPR of.025 is indicated with a dashed vertical line