Jesus Miro-Bueno
@mirobueno.bsky.social
47 followers 70 following 3 posts
Researcher in https://biocomputationlab.com/ at CNB-CSIC Co-founder of BioLab Twins https://t.co/eAvDewMLKv Synthetic & Systems Biology | Digital Twins | Bio & Quantum Computing | Data Analysis | Modeling #synbio #sysbio #digitaltwins #computing #quantum
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Reposted by Jesus Miro-Bueno
pavelcito.bsky.social
Good news everyone! Our new paper in OUP SynBio is out: Construction of a syntrophic Pseudomonas putida consortium with reciprocal substrate processing url: academic.oup.com/synbio/artic...
Many thanks to Barbora and our collaborators @mirobueno.bsky.social and @angelgm.bsky.social
academic.oup.com
Reposted by Jesus Miro-Bueno
angelgm.bsky.social
Brilliant news here! Our manuscript on evolvability was accepted for presentation at @alife2025.bsky.social. So there is a new item in the Lab's conference agenda: #ALIFE Kyoto! More on this coming soon...
Reposted by Jesus Miro-Bueno
cnb-csic.bsky.social
El grupo de Angel Goñi lidera un proyecto "Proof of Concept" @erc.europa.eu para desarrollar gemelos digitales pioneros y analizar en profundidad el comportamiento de células vivas
Más info: www.cnb.csic.es/proyecto-de-...
@angelgm.bsky.social
@csic.es
@sommalliance.bsky.social
Reposted by Jesus Miro-Bueno
csic.es
CSIC @csic.es · Jul 14
💡El #CSIC lidera dos proyectos de innovación europeos para prevenir la sismicidad y analizar en profundidad células vivas

👩‍💻Las iniciativas buscan gestionar los riesgos sísmicos de la actividad geoenergética y desarrollar gemelos digitales pioneros

➡️ https://tinyurl.com/d2m5ffzk
Reposted by Jesus Miro-Bueno
angelgm.bsky.social
The NEWTON project got funded, let's go! #DigitalTwins on their way...
erc.europa.eu
📣 Out now! First results of the 2025 ERC Proof of Concept call.

150 grants – each worth €150,000 – will help ERC grantees to bridge the gap between the discoveries stemming from their frontier research and their practical application.

Recipients, projects, locations👉 buff.ly/pPccOPc

#ERCPoC
Reposted by Jesus Miro-Bueno
angelgm.bsky.social
Just out! Want to use quorum sensing (QS) for cell–cell communication? Check this out — you might find it useful! Kudos to Paula Múgica 👏

Standardized Quorum Sensing Tools for Gram-Negative Bacteria | @pubs.acs.org @acs.org #SyntheticBiology @sevaplasmids.bsky.social pubs.acs.org/doi/10.1021/...
Standardized Quorum Sensing Tools for Gram-Negative Bacteria
Engineering synthetic consortia to perform distributed functions requires robust quorum sensing (QS) systems to facilitate communication between cells. However, the current QS toolbox lacks standardized implementations, which are particularly valuable for use in bacteria beyond the model species Escherichia coli. We developed a set of three QS systems encompassing both sender and receiver modules, constructed using backbones from the SEVA (Standard European Vector Architecture) plasmid collection. This increases versatility, allowing plasmid features like the origin of replication or antibiotic marker to be easily swapped. The systems were characterized using the synthetic biology chassis Pseudomonas putida. We first tested individual modules, then combined sender and receiver modules in the same host, and finally assessed the performance across separate cells to evaluate consortia dynamics. Alongside the QS set, we provide mathematical models and rate parameters to support the design efforts. Together, these tools advance the engineering of robust and predictable multicellular functions.
pubs.acs.org
Reposted by Jesus Miro-Bueno
angelgm.bsky.social
Digital logic doesn't always fit living matter. Here, two suggestions for handling biological information:

1) Random Pulse Computing (von Neumann's old idea)—check the output robustness (left pic)

2) Probabilistic bits, enabling invertible logic (right pic)

🔗 doi.org/10.1103/Phys...
mirobueno.bsky.social
Just published!: "Genetic designs for stochastic and probabilistic biocomputing".

We explore moving beyond binary logic in #SynBio and #Biocomputation using random pulses and p-bits—embracing biological noise to design robust, invertible genetic circuits in cells.

journals.aps.org/pre/abstract...
Genetic designs for stochastic and probabilistic biocomputing
The programming of computations in living cells is achieved by manipulating information flows within genetic networks. Typically, gene expression is discretized into high and low levels, representing ...
journals.aps.org
Reposted by Jesus Miro-Bueno
angelgm.bsky.social
Why cellular computations challenge our design principles.

We write about computational theory, information, living cells, complexity, computers, evolution... I really enjoyed writing this piece on #biocomputation. Kudos to Lewis & Bruno. www.sciencedirect.com/science/arti...
Reposted by Jesus Miro-Bueno
bsc-cns.bsky.social
⚛️💻El ordenador cuántico del BSC @quantumspain.bsky.social estará a disposición de la comunidad investigadora, empresas y organismos públicos

✨Conoced➕sobre el 1r ordenador cuántico de España desarrollado con tecnología 100% europea

🔘 Interactivo: bsc.es/interactivo_...
🔘 PDF: bsc.es/cuantico_pdf
Reposted by Jesus Miro-Bueno
Reposted by Jesus Miro-Bueno
cnb-csic.bsky.social
On 14 February, we’re hosting the Artificial Intelligence in Biology Workshop at #CNB_CSIC with an exceptional line-up of speakers.

The opening talk will be given by @hsalis.bsky.social (Biological Engineering, Penn State University).

@angelgm.bsky.social

Sign up & more info👇
bit.ly/AIinBiology
Reposted by Jesus Miro-Bueno
angelgm.bsky.social
Looking forward to this timely workshop on #AI in #Biology at @cnb-csic.bsky.social (Feb 14)! Excited to hear from experts like @hsalis.bsky.social , @alfonsovalencia.bsky.social , @noeliaferruz.bsky.social , @pablocarb.bsky.social , and others. (Note: Won’t be streamed.) 🧬🤖 #Science #synbio
Reposted by Jesus Miro-Bueno
angelgm.bsky.social
Massive upgrade to our preprint "Reprogramming genetic circuits using space": mathematical modeling, time-based experiments, new functions, more supplementary material... We're thrilled about this work and hope you enjoy it! www.biorxiv.org/content/10.1...
Reposted by Jesus Miro-Bueno