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nf-core @nf-co.re · 1d

Lots of great talks from the @nf-co.re community in the upcoming #NextflowSummit agenda! 🎉

Join the @nextflow.io community online at the end of October. Register for free now! 🎟

For even more #nf-core goodness, you can also sign up for the @nf-co.re hackathon in person in Barcelona right after 👩🏻‍💻

Seqera @seqera.io · 1d

📢 The agenda for the Virtual #NextflowSummit is here! 50+ talks across 6 tracks from researchers, developers & industry leaders driving bioinformatics forward.

💻 Explore the agenda: hubs.la/Q03MyKkP0
🎫 Register for free: hubs.la/Q03MyKh40

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nf-core @nf-co.re · 1d

🧑🏾‍💻 Need help with #nfcore #nextflow ( #bioinformatics ) pipelines, running or developing?

📅 We host regular helpdesks for different TZs

- 🌎 Americas: Tues. @ 14:00 ET (Today)
- 🌍 Eur/M.E./Afr: Thurs. @ 10:00-11:00 CEST
- 🌏 Asia-Pacific: Weds. @ 15:00 NZDT

Join the nf-core slack for more details!

nf-core @nf-co.re · 2d

Pipeline release! nf-core/ampliseq v2.15.0 - Ampliseq Version 2.15.0!

Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.15.0

Release Ampliseq Version 2.15.0 · nf-core/ampliseq

nf-core/ampliseq version 2.15.0 - 2025-10-06 Summary of changes Many issues were fixed and more control was given over QC and taxonomic classification. Detailed changes Added #909,#914 - Parameter...

github.com

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nf-core @nf-co.re · 4d

Pipeline release! nf-core/funcscan v3.0.0 - v3.0.0 - French Chocolatine - 2025-10-04!

Please see the changelog: https://github.com/nf-core/funcscan/releases/tag/3.0.0

Release v3.0.0 - French Chocolatine - 2025-10-04 · nf-core/funcscan

v3.0.0 - French Chocolatine - [2025-10-04] Added #477, #480, #484 Updated to nf-core template 3.2.1., 3.3.1, 3.3.2 (by @jasmezz, @jfy133) #482 Added vertical workflow diagram. (by @jasmezz) Fixe...

github.com

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nf-core @nf-co.re · 8d

Pipeline release! nf-core/mag v5.0.0 - mag 5.0.0 - Green Squirrel!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.0.0

Release mag 5.0.0 - Green Squirrel · nf-core/mag

Added #718 - Add support for independent long-read metagenomic assembly (requested by @ljmesi and many others, added by @muabnezor) #718 - Added metaMDBG and (meta)Flye as long read assemblers (ad...

github.com

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Reposted by nf-core

James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 13d

📣 Last call 📣

👨🏾‍💻 Do you develop a #nextflow #pipeline for #metagenomics, #metataxonomics, #metatranscriptomics, #metaproteomics

🎉 Represent your pipeline at an upcoming community 'meta-omics' exhibition day by giving a tutorial!

✏️ Register your interest to demo your pipeline […]

Original post on genomic.social

genomic.social

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nf-core @nf-co.re · 13d

🧖 Our helpdesk will be open again today at 10:00 CEST (09:00 BST), with nf-core maintainer's team member and module maestro Simon Pearce on-call to help you with anything #nfcore and #nextflow #pipelines!

nf-core @nf-co.re · Jun 5

🧑🏾‍💻 Need help with #nfcore #nextflow (#bioinformatics) pipelines, running or developing?

📅 We host regular helpdesks for different TZs!

- 🌍 Eur/M.E./Afr: Thurs. @ 10:00-11:00 CEST (Today!)
- 🌏 Asia-Pacific: Weds. @ 15:00 NZDT
- 🌎 Americas: Tues. @ 14:00 ET

Join the nf-core slack for more details!

1

nf-core @nf-co.re · 15d

Pipeline release! nf-core/proteinfamilies v1.3.1 - Gold Panda!

Please see the changelog: https://github.com/nf-core/proteinfamilies/releases/tag/1.3.1

Release Gold Panda · nf-core/proteinfamilies

Fixed #112 - Fixed a bug in EXTRACT_FAMILY_REPS, where all sequences were pasted into the family representative one, and updated the relevant local nf-test. (by @vagkaratzas) Changed #106 - Swap...

github.com

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nf-core @nf-co.re · 15d

Pipeline release! nf-core/rnavar v1.2.1 - nf-core/rnavar 1.2.1 - Red Swordfish II!

Please see the changelog: https://github.com/nf-core/rnavar/releases/tag/1.2.1

Release nf-core/rnavar 1.2.1 - Red Swordfish II · nf-core/rnavar

What's Changed Back to dev by @maxulysse in #231 update all modules by @maxulysse in #232 bump vep by @matthdsm in #235 update ensemblvep to 115.1 by @maxulysse in #237 Fix issues with dbsnp and k...

github.com

Reposted by nf-core

Phil Ewels @ewels.bsky.social · 21d

Don't leave it any later - come and join the @nf-co.re #hackathon in Barcelona! 🇪🇸 👩🏻‍💻 🍏

They're brilliant fun and a great way to meet people. There are still tickets left, but they're going fast.. 🎟

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nf-core @nf-co.re · 19d

Time is running out to join the next @nf-co.re #hackathon in #Barcelona! 🇪🇸

Register below to join the fun 😀

Seqera @seqera.io · 19d

Spaces are filling up for the @nf-co.re Hackathon in Barcelona on Oct 28-29! 👩‍💻

🔗 Register now: hubs.la/Q03K3MmF0

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nf-core @nf-co.re · 19d

Pipeline release! nf-core/rnafusion v4.0.0 - 4.0.0!

Please see the changelog: https://github.com/nf-core/rnafusion/releases/tag/4.0.0

Release 4.0.0 · nf-core/rnafusion

Major changes include Recommended download of reference with aws --no-sign-request s3 sync s3://nf-core-awsmegatests/rnafusion/references/ <path_to_references> Changed reference fasta file to the ...

github.com

nf-core @nf-co.re · 20d

Pipeline release! nf-core/rnaseq v3.21.0 - nf-core/rnaseq v3.21.0 - Mercury Macaw!

Please see the changelog: https://github.com/nf-core/rnaseq/releases/tag/3.21.0

Release nf-core/rnaseq v3.21.0 - Mercury Macaw · nf-core/rnaseq

What's Changed Bump version back to dev after release 3.20.0 by @maxulysse in #1597 Add bam input pathway by @pinin4fjords in #1603 Enable BAM input for RSEM by @pinin4fjords in #1604 Fix default ...

github.com

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nf-core @nf-co.re · 21d

Pipeline release! nf-core/pixelator v2.1.0 - nf-core/pixelator 2.1.0!

Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/2.1.0

nf-core @nf-co.re · 21d

Pipeline release! nf-core/pixelator v2.1.0 - nf-core/pixelator 2.1.0!

Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/2.1.0

Release nf-core/pixelator 2.1.0 · nf-core/pixelator

[2.1.0] - 2025-09-17 Enhancements & fixes Move to using quay.io as the container source, to avoid issues with users needing to login to access the Github Container Registry by @johandahlberg in #1...

github.com

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Reposted by nf-core

James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 22d

❓ Do you develop a #nextflow pipeline for #metagenomics, #metataxonomics, #metatranscriptomics, #metaproteomics, etc?

🧑‍💻 I'm looking for #bioinformatics developers to give demos of their #opensource pipelines to the scientific community in a ‘Meta-*omics Nextflow pipeline community exhibition […]

Original post on genomic.social

genomic.social

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nf-core @nf-co.re · 27d

🧑🏾‍💻 Need help with #nfcore #nextflow (#bioinformatics) pipelines, running or developing?

Join our helpdesk!

- 🌍 Eur/M.E./Afr: Thurs. @ 10:00-11:00 CEST (Today!)
- 🌏 Asia-Pacific: Weds. @ 15:00 NZDT
- 🌎 Americas: Tues. @ 14:00 ET

See the nf-core slack and #weekly-helpdesk channel for more details!

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nf-core @nf-co.re · 28d

New blog post! Maintainers Minutes: August 2025
https://nf-co.re/blog/2025/maintainers-minutes-2025-08-29/

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nf-core @nf-co.re · 28d

There are still a few spots left for the Barcelona @nf-co.re hackathon! 🇪🇸🧑🏻‍💻👩🏼‍💻👨🏿‍💻🧑🏼‍💻👩🏽‍💻👨🏻‍💻💫

Grab your registration now before it's too late and join the fun 🤩

Nextflow @nextflow.io · 29d

🚨Both the beginner and advanced #Nextflow Trainings in Barcelona are officially sold out! But you can still get involved at the @nf-co.re Hackathon on Oct 28-29!

Register now: hubs.la/Q03Ht1Nj0

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nf-core @nf-co.re · Sep 3

New blog post! Running nf-core pipelines on Google Colab
https://nf-co.re/blog/2025/nf-core-colab-guide/

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nf-core @nf-co.re · Sep 3

🧑🏾‍💻 Need help with #nfcore #nextflow (n #bioinformatics) pipelines?

📅 Our experts are back after the summer break for our weekly helpdesks!

- 🌍 Eur/M.E./Afr: Thurs. @ 10:00-11:00 CEST
- 🌏 Asia-Pacific: Weds. @ 15:00 NZDT
- 🌎 Americas: Tues. @ 14:00 ET

Join the nf-core slack for more details!

1

nf-core @nf-co.re · Sep 2

Pipeline release! nf-core/scnanoseq v1.2.1 - nf-core/scnanoseq v1.2.1 - Zinc Turtle!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.1

nf-core @nf-co.re · Sep 2

Pipeline release! nf-core/oncoanalyser v2.2.0 - 2.2.0 - Royal Spoonbill!

Please see the changelog: https://github.com/nf-core/oncoanalyser/releases/tag/2.2.0

Release 2.2.0 - Royal Spoonbill · nf-core/oncoanalyser

What's Changed Post release bump by @scwatts in #222 Add reports to tower.yml by @FriederikeHanssen in #220 Implement panel resource creation workflow by @scwatts, @luan-n-nguyen in #230 Implement...

github.com

nf-core @nf-co.re · Aug 29

Pipeline release! nf-core/metatdenovo v1.3.0 - Release v. 1.3.0!

Please see the changelog: https://github.com/nf-core/metatdenovo/releases/tag/1.3.0

Release Release v. 1.3.0 · nf-core/metatdenovo

What's Changed Update documentation by @erikrikarddaniel in #391 Unzipped input can be used by @erikrikarddaniel in #394 Single end reads can be used again by @erikrikarddaniel in #400 New version...

github.com

nf-core @nf-co.re · Aug 28

Pipeline release! nf-core/taxprofiler v1.2.4 - v1.2.4 - Bouncy Basenji Patch!

Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/1.2.4

Release v1.2.4 - Bouncy Basenji Patch · nf-core/taxprofiler

Added #619 Added default pipeline nf-test (added by @sofstam) #615 Updated to nf-core pipeline template v3.3.1 (added by @sofstam) #614 Updated module krakenuniq/preloadedkrakenuniq to fix preload...

github.com