Nicola Vogel
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nicolaavogel.bsky.social
Nicola Vogel
@nicolaavogel.bsky.social
Postdoc at Globe, UCPH - all things bioinformatics for ancient environmental DNA 🦴👩🏼‍💻 🏳️‍🌈🦭
Reposted by Nicola Vogel
Thrilled to see this out in Bioinformatics! AdDeam is a powerful tool to rapidly estimate aDNA damage from BAM files and cluster them to flag outliers—great for large/small aDNA projects and ancient metagenomics to find contigs likely to be modern. Great work by Louis Kraft!
doi.org/10.1093/bioi...
AdDeam: A Fast and Scalable Tool for Estimating and Clustering Reference-Level Damage Profiles
AbstractMotivation. DNA damage patterns, such as increased frequencies of C→T and G→A substitutions at fragment ends, are widely used in ancient DNA studie
doi.org
July 21, 2025 at 10:54 AM
Reposted by Nicola Vogel
Let me be clear, de-extinction of moa is a pipe dream that will not result in a moa...at most they will produce the equivalent of a genetically modified emu that will not be a good proxy of a moa. You can see more expert commentary here predatorfreenz.org/research/exp... 2/3
Expert reaction: plans to "de-extinct" the moa
A new project aims to reintroduce the moa within five to eight years, with plans to release it into secure reserves. Here’s what some experts say.
predatorfreenz.org
July 9, 2025 at 7:42 AM
Reposted by Nicola Vogel
Our latest work is out! Ancient DNA from Danube sturgeon fossils dating back 10,000 years reveals that, despite centuries of decline, some populations have preserved high genetic diversity and ancient lineages. doi.org/10.1098/rstb...
@royalsociety.org @lukeeholman.bsky.social
Continuous mitochondrial diversity of Danube sturgeon species over millennia: insights from ancient DNA | Philosophical Transactions of the Royal Society B: Biological Sciences
Sturgeons, an iconic group of large fishes inhabiting marine and freshwater ecosystems, have historically had significant economic and cultural value, particularly prized for their meat and roe (cavia...
doi.org
July 10, 2025 at 8:01 AM
Reposted by Nicola Vogel
Calling out the recent announcement by Colossal Biosciences, Canterbury Museum, & the Ngai Tahu Research Centre regarding moa de-extinction for what it is....a pipe dream. On the front page of the Otago Daily Times no less.
July 10, 2025 at 1:52 AM
Reposted by Nicola Vogel
Postdoctoral Position in Wildlife Palaeogenomics!

Come join us in beautiful Stockholm!

su.varbi.com/en/what:job/...
June 4, 2025 at 5:44 AM
Reposted by Nicola Vogel
1/12 - New in @science.org !
☠️ Curious of what happened to Yersinia pestis, the bacterium responsible for the Black Death, throughout plague pandemics?
Check out our new study 👇
www.science.org/doi/10.1126/...
Attenuation of virulence in Yersinia pestis across three plague pandemics
Yersinia pestis has spilled over from wild rodent reservoirs to commensal rodents and humans, causing three historically recorded pandemics. Depletion in the copy number of the plasmid-encoded virulen...
www.science.org
May 29, 2025 at 6:10 PM
Reposted by Nicola Vogel
aDNA/aeDNA folks: tired of eyeballing hundreds of damage plots? I am excited to introduce AdDeam—a tool to rapidly generate damage profiles, cluster them, and spot outliers. Great for large sample sets or flagging modern contigs in ancient metagenomics assemblies. www.biorxiv.org/content/10.1...
AdDeam: A Fast and Scalable Tool for Estimating and Clustering Reference-Level Damage Profiles
Motivation DNA damage patterns, such as increased frequencies of C>T and G>A substitutions at fragment ends, are widely used in ancient DNA studies to assess authenticity and detect contamination. In ...
www.biorxiv.org
March 25, 2025 at 10:32 AM
Reposted by Nicola Vogel
Attention ancient environmental DNA folks. In our recent preprint, we provide coordinates of microbial-like regions (contaminated or evolutionary conserved or convergent) for 4,294 eukaryotic reference genomes.
March 24, 2025 at 10:33 AM
Reposted by Nicola Vogel
🚀 Excited to share our new paper:
“Navigating Past Oceans: Comparing #Metabarcoding and #Metagenomics of Marine Ancient Sediment eDNA”

DOI: doi.org/10.1111/1755...

We dive into 8,000 years of marine life from Skagerrak sediments to show what different tools tell us about past #oceans! 🌊🧬
Navigating Past Oceans: Comparing Metabarcoding and Metagenomics of Marine Ancient Sediment Environmental DNA
The condition of ancient marine ecosystems provides context for contemporary biodiversity changes in human-impacted oceans. Sequencing sedimentary ancient DNA (sedaDNA) is an emerging method for gene...
doi.org
February 21, 2025 at 8:59 AM
Reposted by Nicola Vogel
3-y postdoc position in (meta)Genomics of Population Declines elxw.fa.em3.oraclecloud.com/hcmUI/Candid.... If you have experience with low-coverage genomic data, care about biodiversity loss, want to understand host-microbiomes interactions, this post is for you! #museomics #ancientDNA #mammals
March 2, 2025 at 4:51 PM
Reposted by Nicola Vogel
Von Adenauer bis Merkel haben konservative Kanzler sich stets in den Dienst Europas gestellt. Doch Friedrich Merz ist dabei, eine Mehrheit mit erklärten EU-Feinden – mit der in Teilen gesichert rechtsextremen AfD – zu bilden. Dieses Verhalten macht Europa kaputt.

youtu.be/7TAGh4PEBXY
Tun Sie es nicht, Herr Merz | Robert Habeck
YouTube video by Robert Habeck
youtu.be
January 28, 2025 at 8:03 PM
Reposted by Nicola Vogel
Next week we will got back to our schedule of #AaRCTikTalks, and this year starts strong with a talk about the population genomics of the extinct Darwin ground sloths of Chile and another about the salmon fisheries of the Coast Salish #aDNA 🧪🏺🧬
January 22, 2025 at 1:12 PM
Reposted by Nicola Vogel
Very excited (and a bit nervous) to announce that I will be hiring two Postdocs for my new group(!) in Copenhagen to study the Neanderthal and Denisovan DNA which survives in present-day humans. Retweet will be much appreciated :)

Link for application:
candidate.hr-manager.net/ApplicationI...
December 2, 2024 at 12:47 PM
Reposted by Nicola Vogel
The 3rd Ancient Environmental Genomics PhD course (2025) is now open for registration. This has been a true pleasure to teach (and hard work) both times. Come join us and have a week of in-depth hands-on work with ancient metagenomic data and the latest analysis tools. phdcourses.dk/Course/124659
PhD course on Ancient Environmental Genomics - PhD courses in Denmark
Phdcourses.dk is a national database for PhD-courses offered from the universities in Denmark.
phdcourses.dk
November 26, 2024 at 2:29 PM
Reposted by Nicola Vogel
Tagging our seminar speaker @maridehasque.bsky.social

Join us for monthly ancient animal genomics seminar!
Join us for the @aarc-community.bsky.social AaRC TikTalk this Friday November 26th, to hear about ancient chickens and genomic erosion of mammoths.

Sign up www.animal-adna.org/projects/#er...

#ancientDNA #mammoths #chickens
November 27, 2024 at 7:25 AM
Reposted by Nicola Vogel
New PhD studentship opportunity in my lab & with collaborators from the Pinniped Genomes Consortium. Come help us unravel the genomics of seal physiological super powers! Closing date 6th January 2025 🧪🦭🧬🌍🦑🐳 #marine #mammals
#consgen #popgen #phylo #molevol #evolution
yes-dtn.ac.uk/research/the...
The evolutionary genomics of life-history adaptations in pinnipeds - Yorkshire Environmental Sciences • Doctoral Training Network
Project summary Pinnipeds (seals, sea lions, fur seals and walrus) are keystone marine predators, and sentinels for marine ecosystem health. Advances in genomics technologies are opening up the possib...
yes-dtn.ac.uk
November 23, 2024 at 11:28 AM