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#SingleCell preprints @prepub-singlecell.bsky.social · 12h

Bioinformatics Analysis Revealsthe role of DLGAP4 in the development and progression of hepatocellular carcinoma #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-7613609/latest

#SingleCell preprints @prepub-singlecell.bsky.social · 12h

Single-Cell Transcriptome Analysis Reveals the Expression Pattern of PDCD10 in Myeloid Cells of Hepatocellular Carcinoma and Its Correlation with Oxidative Stress, Immune Infiltration, and Immunotherapy Prognosis #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-7375266/latest

#SingleCell preprints @prepub-singlecell.bsky.social · 12h

Single-cell transcriptomic analysis identifies an immune erythroid in paroxysmal nocturnal hemoglobinuria #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-7363120/latest

#SingleCell preprints @prepub-singlecell.bsky.social · 12h

Linking COVID-19 to Neurodegeneration: A Single-Cell Deep Learning Study of PBMCs in Multiple Sclerosis and Alzheimer’s Disease #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-7342199/latest

#SingleCell preprints @prepub-singlecell.bsky.social · 12h

Accelerating scRNA-seq analysis: automated cell type annotation using representation learning and vector search #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.1101/2025.10.06.680787v1

#SingleCell preprints @prepub-singlecell.bsky.social · 21h

acia-workflows: Automated Single-cell Imaging Analysis for Scalable and Deep Learning-based Live-cell Imaging Analysis Workflows #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2510.05886

#SingleCell preprints @prepub-singlecell.bsky.social · 21h

Single-nucleus transcriptome analysis provides new insights into B chromosome elimination in sorghum #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.1101/2025.10.07.680864v1

#SingleCell preprints @prepub-singlecell.bsky.social · 21h

Global Mapping of Combinatorial Chromatin Regulatory Events Using Hi-Plex CUT&Tag #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.1101/2025.10.06.680180v1

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#SingleCell preprints @prepub-singlecell.bsky.social · 21h

Non-redundant roles for paralogous proteins in the yeast glucose-sensing pathway #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.1101/2025.10.07.680982v1

#SingleCell preprints @prepub-singlecell.bsky.social · 21h

Carr\'e du champ flow matching: better quality-generalisation tradeoff in generative models #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2510.05930

#SingleCell preprints @prepub-singlecell.bsky.social · 21h

Opposing CTCF and GATA4 activities set the pace of chromatin topology remodeling during cardiomyogenesis #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.1101/2025.10.07.680441v1

#SingleCell preprints @prepub-singlecell.bsky.social · 21h

Synthetic pectin-cellulose nanofiber capsule provides minimal model capturing mechanics of a regenerating plant cell wall #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.1101/2025.10.07.680914v1

#SingleCell preprints @prepub-singlecell.bsky.social · 21h

Integrative Analysis of GWAS and Single-Cell eQTL Data Identifies Immune Cell-Type-Specific Genetic Signals Co-occurring in Inflammatory Diseases and Lung Cancer Risk #SingleCell 🧪🧬🖥️
http://medrxiv.org/cgi/content/short/2025.10.04.25337327v1

#SingleCell preprints @prepub-singlecell.bsky.social · 21h

Microgravity Activates Monocyte Erk1/2 Signaling and Modulates the Response to Lipopolysaccharide #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-7649043/latest

#SingleCell preprints @prepub-singlecell.bsky.social · 1d

VISTA Uncovers Missing Gene Expression and Spatial-induced Information for Spatial Transcriptomic Data Analysis #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-7564369/latest

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#SingleCell preprints @prepub-singlecell.bsky.social · 1d

IFN-I-Mediated Transcriptional Reprogramming Drives Myeloid-skewed Hematopoiesis in Sickle Cell Anemia #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-7766748/latest

#SingleCell preprints @prepub-singlecell.bsky.social · 1d

Identification of a novel nucleotide metabolism-related signature for predicting lung adenocarcinoma prognosis #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-7509527/latest

#SingleCell preprints @prepub-singlecell.bsky.social · 1d

Pathway-selective strategies reveal specific PI3K–mTOR inhibitors as key partners in KRAS G12D-targeted therapy #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-7614104/latest

#SingleCell preprints @prepub-singlecell.bsky.social · 1d

Generalized promotion time cure model: A new modeling framework to identify cell-type-specific genes and improve survival prognosis #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2509.01001

#SingleCell preprints @prepub-singlecell.bsky.social · 1d

Robust multicellular programs dissect the complex tumor microenvironment and track disease progression in colorectal adenocarcinomas #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2510.05083

#SingleCell preprints @prepub-singlecell.bsky.social · 1d

Predicting cell-specific gene expression profile and knockout impact through deep learning #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2510.03359

#SingleCell preprints @prepub-singlecell.bsky.social · 1d

Discovering Condition-specific Cell Populations via Integrative Clustering of Single-cell Data #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.1101/2025.10.03.680413v1

#SingleCell preprints @prepub-singlecell.bsky.social · 1d

SpaGene: A Deep Adversarial Framework for Spatial Gene Imputation #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.1101/2025.10.03.680242v1

#SingleCell preprints @prepub-singlecell.bsky.social · 1d

Addressing multiple facets of ligand-receptor network inference including single-cell proteomics #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.1101/2025.10.05.680519v1

#SingleCell preprints @prepub-singlecell.bsky.social · 1d

A Fully Automated, Data-Driven Approach for Dimensionality Reduction and Clustering in Single-Cell RNA-seq Analysis #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.1101/2025.10.06.680609v1