Lightnews — Scholar-powered news

arXiv q-bio.GN Genomics

@qbiogn-bot.bsky.social

13 followers 1 following 670 posts

Unofficial bot by @vele.bsky.social w/ http://github.com/so-okada/bXiv https://arxiv.org/list/q-bio.GN/new List https://bsky.app/profile/vele.bsky.social/lists/3lim7ccweqo2j ModList https://bsky.app/profile/vele.bsky.social/lists/3lim3qnexsw2g

github.com

Posts Media Videos Starter Packs

arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 2h

Bang Chen, Lijun Guo, Houli Fan, Wentao He, Rong Zhang: Soft-Evidence Fused Graph Neural Network for Cancer Driver Gene Identification across Multi-View Biological Graphs https://arxiv.org/abs/2510.06290 https://arxiv.org/pdf/2510.06290 https://arxiv.org/html/2510.06290

arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 2h

[2025-10-09 Thu (UTC), 1 new article found for q-bioGN Genomics]

Reposted by arXiv q-bio.GN Genomics

arXiv cs.LG Machine Learning @cslg-bot.bsky.social · 1d

Shadi Rahimian, Mario Fritz: DP-SNP-TIHMM: Differentially Private, Time-Inhomogeneous Hidden Markov Models for Synthesizing Genome-Wide Association Datasets https://arxiv.org/abs/2510.05777 https://arxiv.org/pdf/2510.05777 https://arxiv.org/html/2510.05777

arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 1d

[2025-10-08 Wed (UTC), no new articles found for q-bioGN Genomics]

arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 2d

Furkan Eris, Ulysse McConnell, Can Firtina, Onur Mutlu: RawBench: A Comprehensive Benchmarking Framework for Raw Nanopore Signal Analysis Techniques https://arxiv.org/abs/2510.03629 https://arxiv.org/pdf/2510.03629 https://arxiv.org/html/2510.03629

arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 2d

Yongjian He, Vered Klein, Orr Levy, Xu-Wen Wang: Predicting cell-specific gene expression profile and knockout impact through deep learning https://arxiv.org/abs/2510.03359 https://arxiv.org/pdf/2510.03359 https://arxiv.org/html/2510.03359

arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 2d

[2025-10-07 Tue (UTC), 2 new articles found for q-bioGN Genomics]

Reposted by arXiv q-bio.GN Genomics

arXiv q-bio.BM Biomolecules @qbiobm-bot.bsky.social · 3d

Taehan Kim, Sangdae Nam: SAE-RNA: A Sparse Autoencoder Model for Interpreting RNA Language Model Representations https://arxiv.org/abs/2510.02734 https://arxiv.org/pdf/2510.02734 https://arxiv.org/html/2510.02734

arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 3d

Omer Abid, Gholamreza Rafiee: Cross-Platform DNA Methylation Classifier for the Eight Molecular Subtypes of Group 3 & 4 Medulloblastoma https://arxiv.org/abs/2510.02416 https://arxiv.org/pdf/2510.02416 https://arxiv.org/html/2510.02416

arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 3d

[2025-10-06 Mon (UTC), 1 new article found for q-bioGN Genomics]

arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 6d

Evgeny Knyazev, Timur Kulagin, Ivan Antipenko, Alexander Tonevitsky: Single-cell sequencing of trophoblasts in preeclampsia and chemical hypoxia in BeWo b30 cells reveals EBI3, COL17A1, miR-2... https://arxiv.org/abs/2510.01935 https://arxiv.org/pdf/2510.01935 https://arxiv.org/html/2510.01935

arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 6d

[2025-10-03 Fri (UTC), 1 new article found for q-bioGN Genomics]

Reposted by arXiv q-bio.GN Genomics

arXiv q-bio.QM Quantitative Methods @qbioqm-bot.bsky.social · 7d

Xuanyu Lyu, Jared Balbona, Tong Chen, Matthew C. Keller: The Multivariate SEM-PGS Model: Using Polygenic Scores to Investigate Cross-Trait Genetic Nurture and Assortative Mating https://arxiv.org/abs/2510.00353 https://arxiv.org/pdf/2510.00353 https://arxiv.org/html/2510.00353

arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 7d

Muhammad Omer Latif, Hayat Ullah, Muhammad Ali Shafique, Zhihua Dong: A Deep Learning Pipeline for Epilepsy Genomic Analysis Using GPT-2 XL and NVIDIA H100 https://arxiv.org/abs/2510.00392 https://arxiv.org/pdf/2510.00392 https://arxiv.org/html/2510.00392

arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 7d

[2025-10-02 Thu (UTC), 1 new article found for q-bioGN Genomics]

Reposted by arXiv q-bio.GN Genomics

arXiv cs.AI Artificial Intelligence @csai-bot.bsky.social · 8d

Phillips, Martell, Misra, Stoisser, Prada-Medina, Donovan-Maiye, M\"artens: SynthPert: Enhancing LLM Biological Reasoning via Synthetic Reasoning Traces for Cellular Perturbation Prediction https://arxiv.org/abs/2509.25346 https://arxiv.org/pdf/2509.25346 https://arxiv.org/html/2509.25346

arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 8d

Li, Ziyadeh, Sharma, Dumoulin, Levinsohn, Ha, Pan, Rao, Subramaniyam, Szegedy, Zhang, Susztak: Nephrobase Cell+: Multimodal Single-Cell Foundation Model for Decoding Kidney Biology https://arxiv.org/abs/2509.26223 https://arxiv.org/pdf/2509.26223 https://arxiv.org/html/2509.26223

arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 8d

Xu, Wang, Wang, Li, Zhang, Li, Xie, Wang, Zhou, Wang: scUnified: An AI-Ready Standardized Resource for Single-Cell RNA Sequencing Analysis https://arxiv.org/abs/2509.25884 https://arxiv.org/pdf/2509.25884 https://arxiv.org/html/2509.25884

arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 8d

David Laub, Ethan Armand, Arda Pekis, Zekai Chen, Irsyad Adam, Shaun Porwal, Bing Ren, Kevin Brown, Hannah Carter: GenVarFormer: Predicting gene expression from long-range mutations in cancer https://arxiv.org/abs/2509.25573 https://arxiv.org/pdf/2509.25573 https://arxiv.org/html/2509.25573

arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 8d

Darren King, Yaser Atlasi, Gholamreza Rafiee: DNABERT-2: Fine-Tuning a Genomic Language Model for Colorectal Gene Enhancer Classification https://arxiv.org/abs/2509.25274 https://arxiv.org/pdf/2509.25274 https://arxiv.org/html/2509.25274

arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 8d

[2025-10-01 Wed (UTC), 4 new articles found for q-bioGN Genomics]

Reposted by arXiv q-bio.GN Genomics

arXiv cs.LG Machine Learning @cslg-bot.bsky.social · 9d

Max van Spengler, Artem Moskalev, Tommaso Mansi, Mangal Prakash, Rui Liao: HyperHELM: Hyperbolic Hierarchy Encoding for mRNA Language Modeling https://arxiv.org/abs/2509.24655 https://arxiv.org/pdf/2509.24655 https://arxiv.org/html/2509.24655

Reposted by arXiv q-bio.GN Genomics

arXiv cs.LG Machine Learning @cslg-bot.bsky.social · 9d

Md. Saiful Bari Siddiqui, Nowshin Tarannum: Fusing Sequence Motifs and Pan-Genomic Features: Antimicrobial Resistance Prediction using an Explainable Lightweight 1D CNN-XGBoost Ensemble https://arxiv.org/abs/2509.23552 https://arxiv.org/pdf/2509.23552 https://arxiv.org/html/2509.23552

arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 9d

Luxuan Zhang, Douglas Jiang, Qinglong Wang, Haoqi Sun, Feng Tian: Contrastive Learning Enhances Language Model Based Cell Embeddings for Low-Sample Single Cell Transcriptomics https://arxiv.org/abs/2509.23543 https://arxiv.org/pdf/2509.23543 https://arxiv.org/html/2509.23543

arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 9d

Qian Qin, Heng Li: Challenges in structural variant calling in low-complexity regions https://arxiv.org/abs/2509.23057 https://arxiv.org/pdf/2509.23057 https://arxiv.org/html/2509.23057