Joanna Kaplanis
@queenjobo.bsky.social
97 followers 160 following 8 posts
Genomic Data Scientist @GenomicsEngland
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queenjobo.bsky.social
Thank you to all the co-authors who contributed to this work, especially Prasanth Sivakumar, Dasha Deen, and Dalia Kasperaviciute (who aren't on BlueSky), and a big thank you to the participants and families whose data made this study possible!
queenjobo.bsky.social
This work highlights the importance of evaluating each gene prior to inclusion in genomic screening and how understanding the proportion of samples with prioritised variants is crucial for service design
queenjobo.bsky.social
Our approach prioritised variants in ~80% of participants from the 100,000 Genomes Project and NHS Genomic Medicine Service with diagnostic variants in genes included in the Generation Study.
queenjobo.bsky.social
We estimate that 3–5% of samples will have prioritised variants requiring manual review by clinical scientists, and that <1% will be taken forward for orthogonal testing and genetic confirmation.
queenjobo.bsky.social
Assessing validity of automated variant prioritisation on a gene level led to changes in rules used in variant prioritisation and conditions included.
queenjobo.bsky.social
Genomic sequencing offers the opportunity to screen for hundreds of rare conditions with a single test. We describe the automated variant prioritisation approach for the Generation Study, which is evaluating genomic newborn screening in 100,000 babies across England.
Reposted by Joanna Kaplanis
queenjobo.bsky.social
Impressive work on contribution of common variation to NDD. Not a trivial thing to untangle and really useful FAQ/lay summary. Congrats @qinqinhuang.bsky.social @emiliewigdor.bsky.social @hilarycmartin.bsky.social
emiliewigdor.bsky.social
📣 Big news! Our tag-team effort on common variants in rare neurodevelopmental conditions is now out in Nature 📣

Co-first authoring with the brilliant Qinqin Huang🌟—proof that teamwork does make the dream work. 💪 www.nature.com/articles/s41...
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