Paul Ritsche
@ritpau.bsky.social
PhD Student at DSBG Basel | Exercise Science & Muscle Physiology | (trying to) automate muscle ultrasonography image analysis | https://github.com/PaulRitsche
🚨 DL_Track_US NEWS 🚨 (1/3)
A new release (v0.3.0) 🎉 including:
✅ information transfer between frames
✅ improved UI with live analysis visualization
✅ installation wizard for easy usage
✅ faster processing
Check out the new docs for more info ⤵ paulritsche.github.io/DL_Track_US/...
A new release (v0.3.0) 🎉 including:
✅ information transfer between frames
✅ improved UI with live analysis visualization
✅ installation wizard for easy usage
✅ faster processing
Check out the new docs for more info ⤵ paulritsche.github.io/DL_Track_US/...
DL_Track_US
paulritsche.github.io
June 2, 2025 at 12:01 PM
🚨 DL_Track_US NEWS 🚨 (1/3)
A new release (v0.3.0) 🎉 including:
✅ information transfer between frames
✅ improved UI with live analysis visualization
✅ installation wizard for easy usage
✅ faster processing
Check out the new docs for more info ⤵ paulritsche.github.io/DL_Track_US/...
A new release (v0.3.0) 🎉 including:
✅ information transfer between frames
✅ improved UI with live analysis visualization
✅ installation wizard for easy usage
✅ faster processing
Check out the new docs for more info ⤵ paulritsche.github.io/DL_Track_US/...
🚨New Preprint 🚨
3D Ultrasound is…
✅ reliable between sessions for muscle volume
✅ valid for ground truth phantom assessment
🔗 doi.org/10.31219/osf...
🔬Methods docs:
github.com/AurelieSar/3...
@mrifranz.bsky.social
With Michele Pansini, Romina Ledergerber & Oliver Faude
3D Ultrasound is…
✅ reliable between sessions for muscle volume
✅ valid for ground truth phantom assessment
🔗 doi.org/10.31219/osf...
🔬Methods docs:
github.com/AurelieSar/3...
@mrifranz.bsky.social
With Michele Pansini, Romina Ledergerber & Oliver Faude
OSF
doi.org
April 25, 2025 at 8:27 AM
🚨New Preprint 🚨
3D Ultrasound is…
✅ reliable between sessions for muscle volume
✅ valid for ground truth phantom assessment
🔗 doi.org/10.31219/osf...
🔬Methods docs:
github.com/AurelieSar/3...
@mrifranz.bsky.social
With Michele Pansini, Romina Ledergerber & Oliver Faude
3D Ultrasound is…
✅ reliable between sessions for muscle volume
✅ valid for ground truth phantom assessment
🔗 doi.org/10.31219/osf...
🔬Methods docs:
github.com/AurelieSar/3...
@mrifranz.bsky.social
With Michele Pansini, Romina Ledergerber & Oliver Faude
Reposted by Paul Ritsche
Join us tomorrow, in this year's Love Your Data Week to talk about “Open Data in Musculoskeletal Imaging” presented by @serenabonaretti.bsky.social
@ritpau.bsky.social
and Simone Poncioni
Registration still open:
t.co/C77XLy0jfa
#imaging, #msk, #opendata
@ritpau.bsky.social
and Simone Poncioni
Registration still open:
t.co/C77XLy0jfa
#imaging, #msk, #opendata
https://www.eventbrite.com/e/open-data-in-musculoskeletal-imaging-tickets-1138337631499?utm-campaign=social&utm-content=attendeeshare&utm-medium=discovery&utm-term=listing&utm-source=wsa&aff=ebdsshweb...
t.co
February 12, 2025 at 7:12 AM
Join us tomorrow, in this year's Love Your Data Week to talk about “Open Data in Musculoskeletal Imaging” presented by @serenabonaretti.bsky.social
@ritpau.bsky.social
and Simone Poncioni
Registration still open:
t.co/C77XLy0jfa
#imaging, #msk, #opendata
@ritpau.bsky.social
and Simone Poncioni
Registration still open:
t.co/C77XLy0jfa
#imaging, #msk, #opendata
Reposted by Paul Ritsche
🚨 Registration Open! 🚨
Join us in Brescia 🇮🇹 for the INcEPTION Winter School 2025 on HDsEMG!
📅 10th–14th March 2025
📍 In-person only | Limited spots!
✅ No registration fee
Don't miss this opportunity! Find further details here: forms.gle/EY4wNMnbYRn9nT…
Join us in Brescia 🇮🇹 for the INcEPTION Winter School 2025 on HDsEMG!
📅 10th–14th March 2025
📍 In-person only | Limited spots!
✅ No registration fee
Don't miss this opportunity! Find further details here: forms.gle/EY4wNMnbYRn9nT…
January 29, 2025 at 8:37 AM
🚨 Registration Open! 🚨
Join us in Brescia 🇮🇹 for the INcEPTION Winter School 2025 on HDsEMG!
📅 10th–14th March 2025
📍 In-person only | Limited spots!
✅ No registration fee
Don't miss this opportunity! Find further details here: forms.gle/EY4wNMnbYRn9nT…
Join us in Brescia 🇮🇹 for the INcEPTION Winter School 2025 on HDsEMG!
📅 10th–14th March 2025
📍 In-person only | Limited spots!
✅ No registration fee
Don't miss this opportunity! Find further details here: forms.gle/EY4wNMnbYRn9nT…
A Universal Musculoskeletal Ultrasound Database:
📀 Open data
📊 Benchmarks
🧠 Expert-analyzed datasets
@fabiosartophd.bsky.social @olivierseynnes.bsky.social @mrifranz.bsky.social
🌐 web app: universalmuscledatabase.streamlit.app
📜preprint: doi.org/10.31219/osf...
📀 Open data
📊 Benchmarks
🧠 Expert-analyzed datasets
@fabiosartophd.bsky.social @olivierseynnes.bsky.social @mrifranz.bsky.social
🌐 web app: universalmuscledatabase.streamlit.app
📜preprint: doi.org/10.31219/osf...
UMUD
This app was built in Streamlit! Check it out and visit https://streamlit.io for more awesome community apps. 🎈
universalmuscledatabase.streamlit.app
January 28, 2025 at 9:13 AM
A Universal Musculoskeletal Ultrasound Database:
📀 Open data
📊 Benchmarks
🧠 Expert-analyzed datasets
@fabiosartophd.bsky.social @olivierseynnes.bsky.social @mrifranz.bsky.social
🌐 web app: universalmuscledatabase.streamlit.app
📜preprint: doi.org/10.31219/osf...
📀 Open data
📊 Benchmarks
🧠 Expert-analyzed datasets
@fabiosartophd.bsky.social @olivierseynnes.bsky.social @mrifranz.bsky.social
🌐 web app: universalmuscledatabase.streamlit.app
📜preprint: doi.org/10.31219/osf...
⚠️ DeepACSA News ⚠️
✅ trained with ultrasonography images, automatic muscle CSA analysis works on populations with ACL rupture as well
🔜 Models will be available online.
Amazing efforts from
Beyza Tayfur & Team
and team!
#Muscle #ImageAnalysis #DeepACSA
Article link ⬇️
t.co/8kOW2TdO8J
✅ trained with ultrasonography images, automatic muscle CSA analysis works on populations with ACL rupture as well
🔜 Models will be available online.
Amazing efforts from
Beyza Tayfur & Team
and team!
#Muscle #ImageAnalysis #DeepACSA
Article link ⬇️
t.co/8kOW2TdO8J
https://authors.elsevier.com/c/1k90a14aKMzdFV
t.co
November 24, 2024 at 9:45 AM
⚠️ DeepACSA News ⚠️
✅ trained with ultrasonography images, automatic muscle CSA analysis works on populations with ACL rupture as well
🔜 Models will be available online.
Amazing efforts from
Beyza Tayfur & Team
and team!
#Muscle #ImageAnalysis #DeepACSA
Article link ⬇️
t.co/8kOW2TdO8J
✅ trained with ultrasonography images, automatic muscle CSA analysis works on populations with ACL rupture as well
🔜 Models will be available online.
Amazing efforts from
Beyza Tayfur & Team
and team!
#Muscle #ImageAnalysis #DeepACSA
Article link ⬇️
t.co/8kOW2TdO8J
Reposted by Paul Ritsche
Join us in the Reproducibilitea Unibasel this Thursday for the next invited talk “Reproducible Research: An Introduction to The Turing Way and Binder” by Sarah Gibson @turingway
Registration: www.eventbrite.com/e/reproducib...
Registration: www.eventbrite.com/e/reproducib...
November 19, 2024 at 6:55 PM
Join us in the Reproducibilitea Unibasel this Thursday for the next invited talk “Reproducible Research: An Introduction to The Turing Way and Binder” by Sarah Gibson @turingway
Registration: www.eventbrite.com/e/reproducib...
Registration: www.eventbrite.com/e/reproducib...
⚠️ #openhdemg news ⚠️
📅Come visit us at the SwissRN congress in Zurich next Monday (10.06).
✅Learn about #openhdemg (github.com/GiacomoValli...) and reproducibility
🖥️Congress program: www.reproducibility.ch
📅Come visit us at the SwissRN congress in Zurich next Monday (10.06).
✅Learn about #openhdemg (github.com/GiacomoValli...) and reproducibility
🖥️Congress program: www.reproducibility.ch
Personalized Health Technologies
www.reproducibility.ch
November 19, 2024 at 9:38 PM
⚠️ #openhdemg news ⚠️
📅Come visit us at the SwissRN congress in Zurich next Monday (10.06).
✅Learn about #openhdemg (github.com/GiacomoValli...) and reproducibility
🖥️Congress program: www.reproducibility.ch
📅Come visit us at the SwissRN congress in Zurich next Monday (10.06).
✅Learn about #openhdemg (github.com/GiacomoValli...) and reproducibility
🖥️Congress program: www.reproducibility.ch
❗️DL_Track_US News ❗️
*DL_Track_US is a software to automatically analyse fascicle behaviour in dynamic ultrasonography scans*
🆕v0.2.1 is now on pypi and available as .exe
Including:
✅Fascicle filtering
✅Mask inspection
⬇️Check it out #SciSky
osf.io/7mjsc/ (the repo is now on OSF)
*DL_Track_US is a software to automatically analyse fascicle behaviour in dynamic ultrasonography scans*
🆕v0.2.1 is now on pypi and available as .exe
Including:
✅Fascicle filtering
✅Mask inspection
⬇️Check it out #SciSky
osf.io/7mjsc/ (the repo is now on OSF)
DL_Track_US
This repository contains the example data for the DL_Track_US algorithm. Here, we provide the pre-trained aponeuroses and fascicle neural networks, the training images as well as example and test data...
osf.io
November 19, 2024 at 9:38 PM
❗️DL_Track_US News ❗️
*DL_Track_US is a software to automatically analyse fascicle behaviour in dynamic ultrasonography scans*
🆕v0.2.1 is now on pypi and available as .exe
Including:
✅Fascicle filtering
✅Mask inspection
⬇️Check it out #SciSky
osf.io/7mjsc/ (the repo is now on OSF)
*DL_Track_US is a software to automatically analyse fascicle behaviour in dynamic ultrasonography scans*
🆕v0.2.1 is now on pypi and available as .exe
Including:
✅Fascicle filtering
✅Mask inspection
⬇️Check it out #SciSky
osf.io/7mjsc/ (the repo is now on OSF)
First Post on #SciSky 🧪
We recently created DeepACSA to automatically analyse muscle ACSA in ultrasonography images 💪
❗ We released a new version ❗
New features:
✅ Labelling of images in GUI
✅ Inspection of Labels in GUI
✅ Restructured GUI
Check it out ⏬
github.com/PaulRitsche/DeepACSA/tree/main
We recently created DeepACSA to automatically analyse muscle ACSA in ultrasonography images 💪
❗ We released a new version ❗
New features:
✅ Labelling of images in GUI
✅ Inspection of Labels in GUI
✅ Restructured GUI
Check it out ⏬
github.com/PaulRitsche/DeepACSA/tree/main
GitHub - PaulRitsche/DeepACSA: Automated measurement of muscle anatomical cross-sectional area in ul...
Automated measurement of muscle anatomical cross-sectional area in ultrasound images using deep learning - GitHub - PaulRitsche/DeepACSA: Automated measurement of muscle anatomical cross-sectional ...
github.com
November 19, 2024 at 9:38 PM
First Post on #SciSky 🧪
We recently created DeepACSA to automatically analyse muscle ACSA in ultrasonography images 💪
❗ We released a new version ❗
New features:
✅ Labelling of images in GUI
✅ Inspection of Labels in GUI
✅ Restructured GUI
Check it out ⏬
github.com/PaulRitsche/DeepACSA/tree/main
We recently created DeepACSA to automatically analyse muscle ACSA in ultrasonography images 💪
❗ We released a new version ❗
New features:
✅ Labelling of images in GUI
✅ Inspection of Labels in GUI
✅ Restructured GUI
Check it out ⏬
github.com/PaulRitsche/DeepACSA/tree/main
Reposted by Paul Ritsche
Here’s a recording of a recent talk on how open science practices can improve research reproducibility, in which I begin by describing the events that led to my interest in open science youtu.be/UDaSaE67E3Y?...
Open Science Basel Year 4 #1 - Daniel S. Quintana
First lecture of the fourth year of the Open Science Seminar Series at the University of Basel. Presentation by Daniel S. Quintana on "How Open Science pract...
youtu.be
October 4, 2023 at 9:02 AM
Here’s a recording of a recent talk on how open science practices can improve research reproducibility, in which I begin by describing the events that led to my interest in open science youtu.be/UDaSaE67E3Y?...