@surimk92.bsky.social
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surimk92.bsky.social
Accepted to #NeurIPS25! 🥳 Big congrats to Stephen !! glad to be part of it @flatironinstitute.org
surimk92.bsky.social
🚀Excellent follow-up by Stephen extending Probability Flow Inference to account for cell proliferation. SOTA performance on time-resolved scRNA-seq to infer transcriptional flow dynamics.

In short: inverting the Fokker-Planck in 10–20D with cell growth @ arxiv.org/pdf/2505.13197
arxiv.org
surimk92.bsky.social
5/5 In summary, even in complex cellular organelles like the spindle, active-matter physics combined with carefully measured data yields predictive theories.
surimk92.bsky.social
4/5 Our model reveals that spindle organization is governed by: local MT alignment interaction, diffusive-like motion, directed transport & MT turnover dynamics, all encoded in our continuum theory with interpretable and measurable parameters.
surimk92.bsky.social
3/5 We demonstrate that a simple coarse-grained active liquid crystal model can quantitatively explain both the mean structure and fluctuation spectra of the spindle microtubule network.
surimk92.bsky.social
2/5 How do thousands of microtubules and associated proteins self-organize into the mitotic mammalian spindle ?

We combine detailed static ultrastructural data from electron tomography with dynamic polarization microscopy 🔬 measurements to find out.
surimk92.bsky.social
🧵1/5 Excited to share our new paper:

"Active Liquid Crystal Theory Explains the Collective Organization of Microtubules in Human Mitotic Spindles". Joint work with Colm Kelleher (now at Syracuse, previously Harvard) @flatironinstitute.org

arxiv.org/abs/2507.22273
surimk92.bsky.social
🚀Excellent follow-up by Stephen extending Probability Flow Inference to account for cell proliferation. SOTA performance on time-resolved scRNA-seq to infer transcriptional flow dynamics.

In short: inverting the Fokker-Planck in 10–20D with cell growth @ arxiv.org/pdf/2505.13197
arxiv.org
Reposted
youngbiophymeet.bsky.social
Mark your calendars!! 🗓️ The third Young Biophysicists Meeting will be held on the coming Monday (May 5th) from 11am - 12pm EST. We have four exciting talks lined up for you, see you all soon! Find out more : shorturl.at/4oKNe
Reposted
flatironinstitute.org
A new theoretical model developed by #FlatironCCB scientist @henryhmattingly.bsky.social predicts how bacteria disperse in crowded spaces, opening the door for strategies to control their spread. Read more: www.simonsfoundation.org/2025/03/21/n... #science #biology
Three small video stills that show the path a simulated bacteria takes through an obstacle-filled liquid.
surimk92.bsky.social
Existing biophysics summer school in Greece !! please forward this to anyone interested..
dvavylonis.bsky.social
We are announcing the 2nd biophysics summer school in Rethymno, Crete, Greece for undergraduates, MS and PhD students. Please forward to anyone interested! biophysics.materials.uoc.gr
Lecturers include: Meredith Betterton, Michael Layden, Surya Maddu, Carl Modes, Tassos Pavlopoulos, Stas Shvartsman