Vasily Zaburdaev
@vasilyzaburdaev.bsky.social
130 followers 150 following 4 posts
Physicist. Prof. FAU Erlangen-Nürnberg, Max-Planck-Zentrum für Physik und Medizin. https://mpzpm.mpg.de/research/vasily-zaburdaev
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Reposted by Vasily Zaburdaev
mpi-scienceoflight.bsky.social
With deep sadness, we share that Prof. Jochen Guck, Director at the Max Planck Institute for the Science of Light passed away on October 3. His visionary work bridged physics and medicine. We have lost a brilliant scientist and dear friend.

mpl.mpg.de/news/article...
@fau.de

📸 Stephan Spangenberg
Professor Jochen Guck, Director at the Max Planck Institute for the Science of Light (MPL), He headed the division “Cell Physics” at MPL and the Max-Planck-Zentrum für Physik und Medizin (MPZPM).
Reposted by Vasily Zaburdaev
mpi-scienceoflight.bsky.social
Researchers from #MPZPM and @mpiib-berlin.mpg.de have now compared the ratio of nuclear and cytoplasmic density in different organisms and come to a surprising conclusion: the cell nucleus in eukaryotes is less dense than the rest of the cell.

👉 mpzpm.mpg.de/news/news-de...

#Physics #Medicine
A cell nucleus reconstituted in vitro in Xenopus laevis (African clawed frog) egg extract. Left image shows a fluorescence image where DNA has been stained and right image shows a density map of the same nucleus aquired using Optical Diffraction Tomography (ODT).
vasilyzaburdaev.bsky.social
Indeed, fantastic job Dr. Tim Klingberg! Big thanks to @lennarthilbert.bsky.social for coming over to Erlangen @fau.de for the defense and for all continued years of collaboration that led to this!
lennarthilbert.bsky.social
What a great doctoral defense by Tim Klingberg @fau.de

Based in the group of our collaborator @vasilyzaburdaev.bsky.social Tim decisively contributed to at least 3 of our own lab’s foundational projects, which he showed today at “Max Planck Zentrum Physik und Medizin”

Some impressions
Reposted by Vasily Zaburdaev
lennarthilbert.bsky.social
What a great doctoral defense by Tim Klingberg @fau.de

Based in the group of our collaborator @vasilyzaburdaev.bsky.social Tim decisively contributed to at least 3 of our own lab’s foundational projects, which he showed today at “Max Planck Zentrum Physik und Medizin”

Some impressions
vasilyzaburdaev.bsky.social
Amazing to see this out, and surely this is only the beginning of many related phenomena to be understood and decipher the roles of density distribution inside cells! Congratulations to all involved!
Reposted by Vasily Zaburdaev
Reposted by Vasily Zaburdaev
tirscienceblog.bsky.social
🚨🚨🚨 #PhD position available in @simonereber.bsky.social lab at @mpiib-berlin.mpg.de! World-class training to be had on #microtubule #cytoskeleton biology using #Xenopus & #microscopy readouts. 👇
simonereber.bsky.social
✨We are looking for a PhD student interested in physical cell bio, imaging 🔬, biochemistry, #Xenopus 🐸 & #microtubules

Join us @mpiib-berlin.mpg.de!
Reposted by Vasily Zaburdaev
simonereber.bsky.social
New insights in to the physical properties of the 🐸 #Xenopus cytoplasm!
Great work @mctwo.bsky.social & @biswashere.bsky.social!
Together with @gucklab.bsky.social & @vasilyzaburdaev.bsky.social 😍 @mpi-scienceoflight.bsky.social
@mpiib-berlin.mpg.de

www.biorxiv.org/content/10.1...
Hierarchical Heterogeneities in Spatio-Temporal Dynamics of the Cytoplasm
Understanding of the dynamics inherent to biological matter is crucial for illuminating the physical mechanisms underlying cellular processes. In this study, we employ bright-field differential dynamic microscopy (DDM) to investigate density fluctuations inherent in a cell-free model of eukaryotic cytoplasm. Our measurements reveal subdiffusive fractional Brownian motion and non-Gaussian displacement distributions, highlighting cytoplasmic heterogeneity. We introduce an empirical model that combines fractional Brownian motion with an inverse Gaussian distribution of diffusivities to describe the observed non-Gaussianity. Validated through Monte Carlo simulations, this model allows us to estimate the fractional diffusivity and exponent effectively. By altering macromolecular composition, the addition of energy, and assembly of a cytoskeleton, we identify three independent mechanisms that result in similar fractional exponents yet distinct diffusivities. We find that energy addition leads to non-stationary dynamics, in contrast to the stationary behavior observed under passive conditions. Presence of microtubules introduces a secondary dynamical timescale, which we describe using a two-state fractional Brownian motion model to differentiate between cytosolic and microtubule network associated contributions. Our findings demonstrate the effectiveness of DDM as a label-free tool for quantifying viscoelastic and heterogeneous properties of the cytoplasm and provide insights into how physical and biochemical factors, including cytoskeletal organization, govern subcellular dynamics. ### Competing Interest Statement The authors have declared no competing interest.
www.biorxiv.org
Reposted by Vasily Zaburdaev
biswashere.bsky.social
Beautiful work by @mctwo.bsky.social investigating the spatio-temporal dynamics of the cytoplasm using label-free tools and 🐸 extracts!

🐸 + 🔬 + 📈 = ✨

w. @gucklab.bsky.social , @simonereber.bsky.social , @vasilyzaburdaev.bsky.social

www.biorxiv.org/content/10.1...
www.biorxiv.org
Reposted by Vasily Zaburdaev
simonereber.bsky.social
Happy International #WomenInScienceDay!
maxplanck.de
Happy International #WomenInScienceDay! To all young women & girls dreaming of a career in science - this is for you! 🤗 Keep going - your curiosity, determination, and brilliance will shape the future! ✨ 🔬 #IDWGS2025 #GirlsInSTEM
A photograph of Emmanuelle Charpentier, winner of the 2020 Chemistry Nobel Prize, with the following quotation: "The fact that two women won the prize will hopefully show young girls & female scientists...that nothing is impossible."
Reposted by Vasily Zaburdaev
florianjug.bsky.social
🚨🚨 MEGA JOB ALERT 🚨🚨
Independent Group Leader Positions in Computational Biology @humantechnopole.bsky.social!

Are you ready to start your own lab? Do you know someone who is? Repost this + share with everyone who might want to know about it. Thanks!!! 🙏

More details below... check it out! 🧵 1/3