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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 13d

Reminder that MLSB submissions for ✨BOTH✨ the Copenhagen and the San Diego MLSBs are due one week from now on October 1st 11:59pm AoE!

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Reposted by MLSB (in San Diego + Copenhagen)

jonathanziegler.bsky.social @jonathanziegler.bsky.social · 20d

EuroMLSB at EurIPS is confirmed and the submission deadline is set to Oct 1st. This is **earlier than the EurIPS-suggested workshop deadline** for a reason: we have a shared submission process with MLSB in SanDiego for which the deadline is now also extended to Oct 1st!

MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 21d

🚨To accommodate the addition of EuroMLSB, we have extended the submission deadline to October 1, 2025 11:59pm AoE.

Find information on paper guidelines at mlsb.io. Submissions will be made through CMT.

MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · Aug 19

📢The submission portal for MLSB 2025 is live! Submissions are due September 26, 2025 11:59 pm AoE. cmt3.research.microsoft.com/MLSB2025

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 21d

🚨To accommodate the addition of EuroMLSB, we have extended the submission deadline to October 1, 2025 11:59pm AoE.

Find information on paper guidelines at mlsb.io. Submissions will be made through CMT.

MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · Aug 19

📢The submission portal for MLSB 2025 is live! Submissions are due September 26, 2025 11:59 pm AoE. cmt3.research.microsoft.com/MLSB2025

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 26d

More information about speaker lineup coming soon 😎

None of this would have been possible without
@patrickkidger.bsky.social and @jonathanziegler.bsky.social 🙌

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 26d

Submissions will use the same system, and all papers—regardless of location preference—will receive the same level of review and be evaluated under identical acceptance criteria.

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 26d

You asked and we listened... @workshopmlsb.bsky.social is excited to be expanding to Copenhagen, DK at @euripsconf.bsky.social 🎉

Two workshops (San Diego & Copenhagen) will run concurrently to support broader attendance. You can indicate your location preference(s) in the submission portal💫

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · Aug 19

Information on submission guidelines are on our website at mlsb.io/call-for-papers

Specifically, we ask all authors to adhere to the NeurIPS Rules on use of LLMs!

MLSB 2025 Workshop

Workshop on Machine Learning in Structural Biology co-located with NeurIPS 2025

mlsb.io

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · Aug 19

📢The submission portal for MLSB 2025 is live! Submissions are due September 26, 2025 11:59 pm AoE. cmt3.research.microsoft.com/MLSB2025

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · Jul 28

updated!

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · Jul 28

Stay tuned for details on the 6th edition of MLSB, officially happening this December in downtown San Diego, CA!

Gina El Nesr @ginaelnesr.bsky.social · Jul 28

The MLSB workshop will be in San Diego, CA (co-located with NeurIPS) this year for its 6th edition in December 🧬🔬

Stay tuned @workshopmlsb.bsky.social as we share details about the stellar lineup of speakers, the official call for papers, and other announcements!🌟

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Reposted by MLSB (in San Diego + Copenhagen)

Gina El Nesr @ginaelnesr.bsky.social · Jul 7

Unfortunately, the MLSB Workshop @ NeurIPS (@workshopmlsb.bsky.social) was rejected this year.

Feedback from the deciding committee indicates it was a coin flip decision, with 283 proposals & a number related to “computational biology”

More on the future of MLSB soon…

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · Dec 16

Brought to you by @ginaelnesr.bsky.social @gcorso.bsky.social @hkws.bsky.social @sesamedusa.bsky.social

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · Dec 16

Interested in turning your workshop paper into a publication? MLSB has partnered with PRX Life to start a new special collection! Submission is free and open access -

Editorial: tinyurl.com/mlsbeditorial
Collection: go.aps.org/4fWvbHe
Submission: go.aps.org/3Znaux5

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · Dec 16

Equally, big thank you to our sponsors whom without would not have made MLSB possible. If you or your team is interested in sponsoring MLSB next year, please reach out!

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · Dec 16

Thank you to everyone who came to MLSB this year!!

We are collecting feedback in a short 2 minute survey (and more data means maybe next year we'll train a new model... or just get a bigger room 😄)

forms.gle/WHFNfvxVh3Qx...

MLSB Post-Conference Survey

Thank you for taking a few minutes to complete this survey about your experience at MLSB 2024 @ NeurIPS! Your feedback is valuable and ensures that we run a smooth workshop each year.

docs.google.com

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · Dec 15

Leaderboard is graciously hosted by HuggingFace here: huggingface.co/spaces/MLSB/...

Leaderboard2024 - a Hugging Face Space by MLSB

Discover amazing ML apps made by the community

huggingface.co

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · Dec 15

Time for the MLSB Panel 🎛️ We're welcoming @grocklin.bsky.social @noeliaferruz.bsky.social Erika Alden DeBenedictis @milot.bsky.social Jennifer Listgarten
to the panel, hosted by the wonderful @hkws.bsky.social . 🔥

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · Dec 15

PINDER: pinder.sh
PLINDER: plinder.sh

PINDER: Unlocking new discoveries through a scale-shift in data and real-world relevant and rigorous evaluations

PINDER is an academic-industry collaboration offering a gold standard dataset and evaluations for computational protein-protein interactions prediction.

pinder.sh

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · Dec 15

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · Dec 15

Next up we're highlighting the results of the PINDER and PLINDER challenge.

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · Dec 15

Check out the paper here: www.mlsb.io/papers_2024/...

www.mlsb.io

MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · Dec 15

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · Dec 15

Next up - contributed talk.

HelixFlow, SE(3)–equivariant Full-atom Design of Peptides With Flow-matching Models

Xuezhi Xie, Pedro A Valiente, Jisun Kim, Jin Sub Lee, Philip Kim

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · Dec 15

Check out the paper: www.biorxiv.org/content/10.1...

FlowPacker: Protein side-chain packing with torsional flow matching

Accurate prediction of protein side-chain conformations is necessary to understand protein folding, proteinprotein interactions and facilitate de novo protein design. Here we apply torsional flow matc...

www.biorxiv.org

MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · Dec 15

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