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Reposted by Xavier Hernandez Alias

Munich RNA Club @munichrna.bsky.social · Sep 9

Here our next RNA Club!
📅 24/09/25
📍 @mpibiochem.bsky.social
We will hear great talks from Selay Kaya (Nedialkova lab), Pierfrancesco D'Orlando (Rad lab), Gesine Behrens (Heissmeyer lab), Christopher Kuhn (Conti lab) and Kathrin Halter (Carell lab)!
See you there!

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Reposted by Xavier Hernandez Alias

Gagneur lab @gagneurlab.bsky.social · Sep 7

Congrats for the poster prize at #EMBLProtein, Xavi @xavierheal.bsky.social‬
! Wonderful to dissect the translational response to metabolic shifts with time series of ribosome profiling and AI. Exciting multidisciplinary project. So glad to work with you and Danny Nedialkova on this.

Xavier Hernandez Alias @xavierheal.bsky.social · Sep 6

Exciting science at the #EMBLProtein meeting, and still one more day ahead! If you missed it, come today by my poster 130 to learn about our work at Nedialkova's @mpibiochem.bsky.social and @gagneurlab.bsky.social !

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Xavier Hernandez Alias @xavierheal.bsky.social · Sep 7

Thank you!! Happy to be part of this multidisciplinary adventure!!! 😊😊

Xavier Hernandez Alias @xavierheal.bsky.social · Sep 6

Exciting science at the #EMBLProtein meeting, and still one more day ahead! If you missed it, come today by my poster 130 to learn about our work at Nedialkova's @mpibiochem.bsky.social and @gagneurlab.bsky.social !

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Reposted by Xavier Hernandez Alias

Manuel Irimia @mirimiam.bsky.social · Jul 23

🚨🚨🚨

Please RT!

We're looking for a postdoc to join an exciting joint project between our lab @upf.edu & @crg.eu (Barcelona) and the Sander lab @mdc-berlin.bsky.social (Berlin) investigating how alternative splicing and microexons influences the maturation of pancreatic islets.

Deadline: 30/09/25👇

www.upf.edu

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Xavier Hernandez Alias @xavierheal.bsky.social · Jul 1

Extremely vibrant and amazing science at the EMBO Fellows' meeting, thank you @embo.org for organizing! It is so exciting getting to know so many excellent scientists that share the same passion for research!!

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Reposted by Xavier Hernandez Alias

Gagneur lab @gagneurlab.bsky.social · Jun 5

Update of our protein outlier caller PROTRIDER. We now handle missing values, a widespread issue for mass spec where missing values are not a random -- and this improves outlier detection on non-missing data! Thumbs up to Daniela and George for the great work.
doi.org/10.1101/2025...

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Reposted by Xavier Hernandez Alias

Gagneur lab @gagneurlab.bsky.social · May 24

This year, the lab has a great representation at the #eshg2025: 3 talks, 2 posters, 1 spin-off stand ! 1/n

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Xavier Hernandez Alias @xavierheal.bsky.social · May 21

What a fun and amazing experience to be this year at the other side of the stage @pintofscience.de! 🙈
Thank you for organizing and everyone for participating. I think it was the most exciting and also toughest Q&A session ever! 😊
@mpibiochem.bsky.social @gagneurlab.bsky.social

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Reposted by Xavier Hernandez Alias

Munich RNA Club @munichrna.bsky.social · May 20

Take you agendas for our next RNA club!
📅4th June 2025 15h
📍@www.helmholtz-munich.de
We will hear great talks from Patrick Schinke (@marsico-lab.bsky.social), Niklas Petzold (@sattler-lab.bsky.social), and Christoph Mueller-Hermes (Dueck's lab @tum.de). See you there!

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Xavier Hernandez Alias @xavierheal.bsky.social · May 8

Amazing conference on the application of AI in RNA biology! With great science and and better scientists. Thrilling share and discuss such exciting topics and to be part of this emerging field! @gagneurlab.bsky.social @mpibiochem.bsky.social

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Xavier Hernandez Alias @xavierheal.bsky.social · May 6

I am very happy to participate in this year's @pintofscience.de!! I will be giving a talk on AI and biology May 20th at the Keg bar. Don't miss this and other events, tickets are out!
@gagneurlab.bsky.social
@mpibiochem.bsky.social
@tum.de

Pint of Science Germany @pintofscience.de · May 4

In #Munich there are a lot of scientists doing cool research 👩🏼‍🔬👨🏽‍🔬 Do you already know them? You can come and meet them at our festival, the #pint25de! They'll wait for you in your favourite pubs and cafes, with events in 🇩🇪 & 🇬🇧

Programme & tickets 👇
www.pintofscience.de
#München #wisskomm

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Reposted by Xavier Hernandez Alias

Kipoi @kipoizoo.bsky.social · May 2

Join us for our next Kipoi Seminar with Laura Martens, Gagneur lab, TUM @lauradmartens.bsky.social @gagneurlab.bsky.social @tum.de
🐕scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution
📅Wed May 7, 5:30pm CET
🧬https://kipoi.org/seminar/
🦋kipoizoo.bsky

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Xavier Hernandez Alias @xavierheal.bsky.social · May 4

Ready for 4 days full of talks and posters on RNA and AI, in the beautiful Ascona! #rnaai

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Xavier Hernandez Alias @xavierheal.bsky.social · Mar 20

Sunsets from @mpibiochem.bsky.social 😍

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Reposted by Xavier Hernandez Alias

Gagneur lab @gagneurlab.bsky.social · Feb 3

On Wed., Pedro @pedrotomazdasilva.bsky.social talks about interpreting DNA Language models through nucleotide dependency analyses. Capturing functional interactions -maps like this one for an intron- and more: RNA structures, reg motifs,... preprint:
www.biorxiv.org/content/10.1...

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Reposted by Xavier Hernandez Alias

Munich RNA Club @munichrna.bsky.social · Jan 29

Join us in our next #MunichRNA19F!
📍 @mpibiochem.bsky.social
📅 19/02/2025

We will hear amazing talks from Shuyao Sha (@kusterlab.bsky.social), @lauradmartens.bsky.social (@gagneurlab.bsky.social), @michaelkugler.bsky.social (@hopfnerlab.bsky.social), Marc Schmitt-Supprian.

Don't miss it! 🧬😀

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Reposted by Xavier Hernandez Alias

Manuel Irimia @mirimiam.bsky.social · Dec 23

🚨🚨🚨

If you're a bioinformatician who loves:

🧬 #SingleCell #LongReadSequencing & #AlternativeSplicing
🚀 Collaborating and travelling

Apply to work with us at the spectacular BIMSB (@mdc-berlin.bsky.social) in Berlin + @upf.edu [email protected] in Barcelona. Qs: www.transdevolab.com

Please RT! 🙏

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Reposted by Xavier Hernandez Alias

Gagneur lab @gagneurlab.bsky.social · Dec 23

Hey reg genomics folks, here is our little x-mas present: Flashzoi. Borzoi. Just as good. 3x faster. Thumbs up to @johahi.bsky.social for the great initiative, conception & implementation. Big thanks to Johannes Linder, David Kelley and colleagues to have created Borzoi and shared it freely.

bioRxiv Genomics @biorxiv-genomic.bsky.social · Dec 22

Flashzoi: An enhanced Borzoi model for accelerated genomic analysis https://www.biorxiv.org/content/10.1101/2024.12.18.629121v1

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Xavier Hernandez Alias @xavierheal.bsky.social · Dec 20

Thanks Max!

Xavier Hernandez Alias @xavierheal.bsky.social · Dec 20

Thank you @upf.edu @crg.eu for making my PhD journey so amazing! I am honored to have received the Extraordinary Award. And a special thanks to my PhD supervisors @martinschaefer.bsky.social and Luis Serrano.

Moltes gràcies!

Universitat Pompeu Fabra @upf.edu · Dec 19

Aquesta tarda hem celebrat l'acte de lliurament dels Premis Acadèmics de Grau, Màster i Doctorat 2024 de la #UPFBarcelona.

Enhorabona #ExtraordinarisUPF!

Fotografia de família de l'acte de lliurament dels Premis Acadèmics de Grau, Màster i Doctorat 2024 de la #UPFBarcelona

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Xavier Hernandez Alias @xavierheal.bsky.social · Dec 15

Very happy to share our modeling of mRNA translation at the @SCB_iec Bioinformatics and Genomics!
@gagneurlab & Nedialkova lab @MPI_Biochem https://t.co/ie5HnWaBHQ

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Xavier Hernandez Alias @xavierheal.bsky.social · Dec 15

Tomorrow! 👇 https://t.co/HQ4G0Vx6Al

Xavier Hernandez Alias @xavierheal.bsky.social · Dec 15

Beautiful sunsets from @MPI_Biochem 😍 https://t.co/PnjHhSmuBE

Xavier Hernandez Alias @xavierheal.bsky.social · Dec 15

Ready for some days of exciting science @EESRNA! Looking forward to share our latest results from @MPI_Biochem @gagneurlab !! 😊 https://t.co/I9ORug4lK8