Xavier Hernandez Alias
@xavierheal.bsky.social
💻Systems biology and ML, 🧬 regulatory genomics, divulgació
Postdoc at Nedialkova lab @mpibiochem.bsky.social and @gagneurlab.bsky.social | @humboldt-foundation.de Fellow | EMBO Fellow | PhD @CRG.eu | Professor col·laborador @UOCuniversitat.bsky.social
Postdoc at Nedialkova lab @mpibiochem.bsky.social and @gagneurlab.bsky.social | @humboldt-foundation.de Fellow | EMBO Fellow | PhD @CRG.eu | Professor col·laborador @UOCuniversitat.bsky.social
It is always a lot of fun to share science. So happy to take part in the @mpibiochem.bsky.social Open Day!
October 25, 2025 at 1:01 PM
It is always a lot of fun to share science. So happy to take part in the @mpibiochem.bsky.social Open Day!
Reposted by Xavier Hernandez Alias
Are you looking for a PhD? Join us in Barcelona! You'll dive into a community of >100 PhD students from 30 countries exploring the frontiers of biology. You can also join an online workshop on 6 November (15:00 CET) to learn how to find the right lab for you.
More info: www.crg.eu/en/content/t...
More info: www.crg.eu/en/content/t...
October 23, 2025 at 7:56 AM
Are you looking for a PhD? Join us in Barcelona! You'll dive into a community of >100 PhD students from 30 countries exploring the frontiers of biology. You can also join an online workshop on 6 November (15:00 CET) to learn how to find the right lab for you.
More info: www.crg.eu/en/content/t...
More info: www.crg.eu/en/content/t...
Reposted by Xavier Hernandez Alias
Torna l'OBCatalunya que arriba a la 16a edició‼️
Repetim l'experiència i esperonem les vocacions científiques i el gaudi de la Biologia
🔔 Docents de #biologia, ja podeu inscriure els vostres alumnes 🔚 9/12
🔗 https://cbiolegs.cat/2025/10/21/torna-olimpiada-de-biologia-de-catalunya-obc-2026/
Repetim l'experiència i esperonem les vocacions científiques i el gaudi de la Biologia
🔔 Docents de #biologia, ja podeu inscriure els vostres alumnes 🔚 9/12
🔗 https://cbiolegs.cat/2025/10/21/torna-olimpiada-de-biologia-de-catalunya-obc-2026/
October 23, 2025 at 4:16 PM
Torna l'OBCatalunya que arriba a la 16a edició‼️
Repetim l'experiència i esperonem les vocacions científiques i el gaudi de la Biologia
🔔 Docents de #biologia, ja podeu inscriure els vostres alumnes 🔚 9/12
🔗 https://cbiolegs.cat/2025/10/21/torna-olimpiada-de-biologia-de-catalunya-obc-2026/
Repetim l'experiència i esperonem les vocacions científiques i el gaudi de la Biologia
🔔 Docents de #biologia, ja podeu inscriure els vostres alumnes 🔚 9/12
🔗 https://cbiolegs.cat/2025/10/21/torna-olimpiada-de-biologia-de-catalunya-obc-2026/
Reposted by Xavier Hernandez Alias
Here our next RNA Club!
📅 24/09/25
📍 @mpibiochem.bsky.social
We will hear great talks from Selay Kaya (Nedialkova lab), Pierfrancesco D'Orlando (Rad lab), Gesine Behrens (Heissmeyer lab), Christopher Kuhn (Conti lab) and Kathrin Halter (Carell lab)!
See you there!
📅 24/09/25
📍 @mpibiochem.bsky.social
We will hear great talks from Selay Kaya (Nedialkova lab), Pierfrancesco D'Orlando (Rad lab), Gesine Behrens (Heissmeyer lab), Christopher Kuhn (Conti lab) and Kathrin Halter (Carell lab)!
See you there!
September 9, 2025 at 2:25 PM
Here our next RNA Club!
📅 24/09/25
📍 @mpibiochem.bsky.social
We will hear great talks from Selay Kaya (Nedialkova lab), Pierfrancesco D'Orlando (Rad lab), Gesine Behrens (Heissmeyer lab), Christopher Kuhn (Conti lab) and Kathrin Halter (Carell lab)!
See you there!
📅 24/09/25
📍 @mpibiochem.bsky.social
We will hear great talks from Selay Kaya (Nedialkova lab), Pierfrancesco D'Orlando (Rad lab), Gesine Behrens (Heissmeyer lab), Christopher Kuhn (Conti lab) and Kathrin Halter (Carell lab)!
See you there!
Reposted by Xavier Hernandez Alias
Congrats for the poster prize at #EMBLProtein, Xavi @xavierheal.bsky.social
! Wonderful to dissect the translational response to metabolic shifts with time series of ribosome profiling and AI. Exciting multidisciplinary project. So glad to work with you and Danny Nedialkova on this.
! Wonderful to dissect the translational response to metabolic shifts with time series of ribosome profiling and AI. Exciting multidisciplinary project. So glad to work with you and Danny Nedialkova on this.
Exciting science at the #EMBLProtein meeting, and still one more day ahead! If you missed it, come today by my poster 130 to learn about our work at Nedialkova's @mpibiochem.bsky.social and @gagneurlab.bsky.social !
September 7, 2025 at 11:04 AM
Congrats for the poster prize at #EMBLProtein, Xavi @xavierheal.bsky.social
! Wonderful to dissect the translational response to metabolic shifts with time series of ribosome profiling and AI. Exciting multidisciplinary project. So glad to work with you and Danny Nedialkova on this.
! Wonderful to dissect the translational response to metabolic shifts with time series of ribosome profiling and AI. Exciting multidisciplinary project. So glad to work with you and Danny Nedialkova on this.
Exciting science at the #EMBLProtein meeting, and still one more day ahead! If you missed it, come today by my poster 130 to learn about our work at Nedialkova's @mpibiochem.bsky.social and @gagneurlab.bsky.social !
September 6, 2025 at 5:57 AM
Exciting science at the #EMBLProtein meeting, and still one more day ahead! If you missed it, come today by my poster 130 to learn about our work at Nedialkova's @mpibiochem.bsky.social and @gagneurlab.bsky.social !
Reposted by Xavier Hernandez Alias
🚨🚨🚨
Please RT!
We're looking for a postdoc to join an exciting joint project between our lab @upf.edu & @crg.eu (Barcelona) and the Sander lab @mdc-berlin.bsky.social (Berlin) investigating how alternative splicing and microexons influences the maturation of pancreatic islets.
Deadline: 30/09/25👇
Please RT!
We're looking for a postdoc to join an exciting joint project between our lab @upf.edu & @crg.eu (Barcelona) and the Sander lab @mdc-berlin.bsky.social (Berlin) investigating how alternative splicing and microexons influences the maturation of pancreatic islets.
Deadline: 30/09/25👇
www.upf.edu
July 23, 2025 at 2:28 PM
🚨🚨🚨
Please RT!
We're looking for a postdoc to join an exciting joint project between our lab @upf.edu & @crg.eu (Barcelona) and the Sander lab @mdc-berlin.bsky.social (Berlin) investigating how alternative splicing and microexons influences the maturation of pancreatic islets.
Deadline: 30/09/25👇
Please RT!
We're looking for a postdoc to join an exciting joint project between our lab @upf.edu & @crg.eu (Barcelona) and the Sander lab @mdc-berlin.bsky.social (Berlin) investigating how alternative splicing and microexons influences the maturation of pancreatic islets.
Deadline: 30/09/25👇
Extremely vibrant and amazing science at the EMBO Fellows' meeting, thank you @embo.org for organizing! It is so exciting getting to know so many excellent scientists that share the same passion for research!!
July 1, 2025 at 3:28 PM
Extremely vibrant and amazing science at the EMBO Fellows' meeting, thank you @embo.org for organizing! It is so exciting getting to know so many excellent scientists that share the same passion for research!!
Reposted by Xavier Hernandez Alias
Update of our protein outlier caller PROTRIDER. We now handle missing values, a widespread issue for mass spec where missing values are not a random -- and this improves outlier detection on non-missing data! Thumbs up to Daniela and George for the great work.
doi.org/10.1101/2025...
doi.org/10.1101/2025...
June 5, 2025 at 4:44 AM
Update of our protein outlier caller PROTRIDER. We now handle missing values, a widespread issue for mass spec where missing values are not a random -- and this improves outlier detection on non-missing data! Thumbs up to Daniela and George for the great work.
doi.org/10.1101/2025...
doi.org/10.1101/2025...
What a fun and amazing experience to be this year at the other side of the stage @pintofscience.de! 🙈
Thank you for organizing and everyone for participating. I think it was the most exciting and also toughest Q&A session ever! 😊
@mpibiochem.bsky.social @gagneurlab.bsky.social
Thank you for organizing and everyone for participating. I think it was the most exciting and also toughest Q&A session ever! 😊
@mpibiochem.bsky.social @gagneurlab.bsky.social
May 21, 2025 at 6:27 AM
What a fun and amazing experience to be this year at the other side of the stage @pintofscience.de! 🙈
Thank you for organizing and everyone for participating. I think it was the most exciting and also toughest Q&A session ever! 😊
@mpibiochem.bsky.social @gagneurlab.bsky.social
Thank you for organizing and everyone for participating. I think it was the most exciting and also toughest Q&A session ever! 😊
@mpibiochem.bsky.social @gagneurlab.bsky.social
Reposted by Xavier Hernandez Alias
Take you agendas for our next RNA club!
📅4th June 2025 15h
📍@www.helmholtz-munich.de
We will hear great talks from Patrick Schinke (@marsico-lab.bsky.social), Niklas Petzold (@sattler-lab.bsky.social), and Christoph Mueller-Hermes (Dueck's lab @tum.de). See you there!
📅4th June 2025 15h
📍@www.helmholtz-munich.de
We will hear great talks from Patrick Schinke (@marsico-lab.bsky.social), Niklas Petzold (@sattler-lab.bsky.social), and Christoph Mueller-Hermes (Dueck's lab @tum.de). See you there!
May 20, 2025 at 9:50 AM
Take you agendas for our next RNA club!
📅4th June 2025 15h
📍@www.helmholtz-munich.de
We will hear great talks from Patrick Schinke (@marsico-lab.bsky.social), Niklas Petzold (@sattler-lab.bsky.social), and Christoph Mueller-Hermes (Dueck's lab @tum.de). See you there!
📅4th June 2025 15h
📍@www.helmholtz-munich.de
We will hear great talks from Patrick Schinke (@marsico-lab.bsky.social), Niklas Petzold (@sattler-lab.bsky.social), and Christoph Mueller-Hermes (Dueck's lab @tum.de). See you there!
Amazing conference on the application of AI in RNA biology! With great science and and better scientists. Thrilling share and discuss such exciting topics and to be part of this emerging field! @gagneurlab.bsky.social @mpibiochem.bsky.social
May 8, 2025 at 3:32 PM
Amazing conference on the application of AI in RNA biology! With great science and and better scientists. Thrilling share and discuss such exciting topics and to be part of this emerging field! @gagneurlab.bsky.social @mpibiochem.bsky.social
I am very happy to participate in this year's @pintofscience.de!! I will be giving a talk on AI and biology May 20th at the Keg bar. Don't miss this and other events, tickets are out!
@gagneurlab.bsky.social
@mpibiochem.bsky.social
@tum.de
@gagneurlab.bsky.social
@mpibiochem.bsky.social
@tum.de
In #Munich there are a lot of scientists doing cool research 👩🏼🔬👨🏽🔬 Do you already know them? You can come and meet them at our festival, the #pint25de! They'll wait for you in your favourite pubs and cafes, with events in 🇩🇪 & 🇬🇧
Programme & tickets 👇
www.pintofscience.de
#München #wisskomm
Programme & tickets 👇
www.pintofscience.de
#München #wisskomm
May 6, 2025 at 9:21 PM
I am very happy to participate in this year's @pintofscience.de!! I will be giving a talk on AI and biology May 20th at the Keg bar. Don't miss this and other events, tickets are out!
@gagneurlab.bsky.social
@mpibiochem.bsky.social
@tum.de
@gagneurlab.bsky.social
@mpibiochem.bsky.social
@tum.de
Reposted by Xavier Hernandez Alias
Join us for our next Kipoi Seminar with Laura Martens, Gagneur lab, TUM @lauradmartens.bsky.social @gagneurlab.bsky.social @tum.de
🐕scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution
📅Wed May 7, 5:30pm CET
🧬https://kipoi.org/seminar/
🦋kipoizoo.bsky
🐕scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution
📅Wed May 7, 5:30pm CET
🧬https://kipoi.org/seminar/
🦋kipoizoo.bsky
May 2, 2025 at 11:01 AM
Join us for our next Kipoi Seminar with Laura Martens, Gagneur lab, TUM @lauradmartens.bsky.social @gagneurlab.bsky.social @tum.de
🐕scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution
📅Wed May 7, 5:30pm CET
🧬https://kipoi.org/seminar/
🦋kipoizoo.bsky
🐕scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution
📅Wed May 7, 5:30pm CET
🧬https://kipoi.org/seminar/
🦋kipoizoo.bsky
Sunsets from @mpibiochem.bsky.social 😍
March 20, 2025 at 6:11 PM
Sunsets from @mpibiochem.bsky.social 😍
Reposted by Xavier Hernandez Alias
On Wed., Pedro @pedrotomazdasilva.bsky.social talks about interpreting DNA Language models through nucleotide dependency analyses. Capturing functional interactions -maps like this one for an intron- and more: RNA structures, reg motifs,... preprint:
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
February 3, 2025 at 7:53 PM
On Wed., Pedro @pedrotomazdasilva.bsky.social talks about interpreting DNA Language models through nucleotide dependency analyses. Capturing functional interactions -maps like this one for an intron- and more: RNA structures, reg motifs,... preprint:
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
Reposted by Xavier Hernandez Alias
Join us in our next #MunichRNA19F!
📍 @mpibiochem.bsky.social
📅 19/02/2025
We will hear amazing talks from Shuyao Sha (@kusterlab.bsky.social), @lauradmartens.bsky.social (@gagneurlab.bsky.social), @michaelkugler.bsky.social (@hopfnerlab.bsky.social), Marc Schmitt-Supprian.
Don't miss it! 🧬😀
📍 @mpibiochem.bsky.social
📅 19/02/2025
We will hear amazing talks from Shuyao Sha (@kusterlab.bsky.social), @lauradmartens.bsky.social (@gagneurlab.bsky.social), @michaelkugler.bsky.social (@hopfnerlab.bsky.social), Marc Schmitt-Supprian.
Don't miss it! 🧬😀
January 29, 2025 at 12:00 PM
Join us in our next #MunichRNA19F!
📍 @mpibiochem.bsky.social
📅 19/02/2025
We will hear amazing talks from Shuyao Sha (@kusterlab.bsky.social), @lauradmartens.bsky.social (@gagneurlab.bsky.social), @michaelkugler.bsky.social (@hopfnerlab.bsky.social), Marc Schmitt-Supprian.
Don't miss it! 🧬😀
📍 @mpibiochem.bsky.social
📅 19/02/2025
We will hear amazing talks from Shuyao Sha (@kusterlab.bsky.social), @lauradmartens.bsky.social (@gagneurlab.bsky.social), @michaelkugler.bsky.social (@hopfnerlab.bsky.social), Marc Schmitt-Supprian.
Don't miss it! 🧬😀
Reposted by Xavier Hernandez Alias
🚨🚨🚨
If you're a bioinformatician who loves:
🧬 #SingleCell #LongReadSequencing & #AlternativeSplicing
🚀 Collaborating and travelling
Apply to work with us at the spectacular BIMSB (@mdc-berlin.bsky.social) in Berlin + @upf.edu[email protected] in Barcelona. Qs: www.transdevolab.com
Please RT! 🙏
If you're a bioinformatician who loves:
🧬 #SingleCell #LongReadSequencing & #AlternativeSplicing
🚀 Collaborating and travelling
Apply to work with us at the spectacular BIMSB (@mdc-berlin.bsky.social) in Berlin + @upf.edu[email protected] in Barcelona. Qs: www.transdevolab.com
Please RT! 🙏
December 23, 2024 at 3:54 PM
🚨🚨🚨
If you're a bioinformatician who loves:
🧬 #SingleCell #LongReadSequencing & #AlternativeSplicing
🚀 Collaborating and travelling
Apply to work with us at the spectacular BIMSB (@mdc-berlin.bsky.social) in Berlin + @upf.edu[email protected] in Barcelona. Qs: www.transdevolab.com
Please RT! 🙏
If you're a bioinformatician who loves:
🧬 #SingleCell #LongReadSequencing & #AlternativeSplicing
🚀 Collaborating and travelling
Apply to work with us at the spectacular BIMSB (@mdc-berlin.bsky.social) in Berlin + @upf.edu[email protected] in Barcelona. Qs: www.transdevolab.com
Please RT! 🙏
Reposted by Xavier Hernandez Alias
Hey reg genomics folks, here is our little x-mas present: Flashzoi. Borzoi. Just as good. 3x faster. Thumbs up to @johahi.bsky.social for the great initiative, conception & implementation. Big thanks to Johannes Linder, David Kelley and colleagues to have created Borzoi and shared it freely.
Flashzoi: An enhanced Borzoi model for accelerated genomic analysis https://www.biorxiv.org/content/10.1101/2024.12.18.629121v1
December 23, 2024 at 9:15 AM
Hey reg genomics folks, here is our little x-mas present: Flashzoi. Borzoi. Just as good. 3x faster. Thumbs up to @johahi.bsky.social for the great initiative, conception & implementation. Big thanks to Johannes Linder, David Kelley and colleagues to have created Borzoi and shared it freely.
Thank you @upf.edu @crg.eu for making my PhD journey so amazing! I am honored to have received the Extraordinary Award. And a special thanks to my PhD supervisors @martinschaefer.bsky.social and Luis Serrano.
Moltes gràcies!
Moltes gràcies!
Aquesta tarda hem celebrat l'acte de lliurament dels Premis Acadèmics de Grau, Màster i Doctorat 2024 de la #UPFBarcelona.
Enhorabona #ExtraordinarisUPF!
Enhorabona #ExtraordinarisUPF!
December 20, 2024 at 7:40 AM
Thank you @upf.edu @crg.eu for making my PhD journey so amazing! I am honored to have received the Extraordinary Award. And a special thanks to my PhD supervisors @martinschaefer.bsky.social and Luis Serrano.
Moltes gràcies!
Moltes gràcies!
Very happy to share our modeling of mRNA translation at the @SCB_iec Bioinformatics and Genomics!
@gagneurlab & Nedialkova lab @MPI_Biochem https://t.co/ie5HnWaBHQ
@gagneurlab & Nedialkova lab @MPI_Biochem https://t.co/ie5HnWaBHQ
December 15, 2024 at 10:45 AM
Very happy to share our modeling of mRNA translation at the @SCB_iec Bioinformatics and Genomics!
@gagneurlab & Nedialkova lab @MPI_Biochem https://t.co/ie5HnWaBHQ
@gagneurlab & Nedialkova lab @MPI_Biochem https://t.co/ie5HnWaBHQ
Tomorrow! 👇 https://t.co/HQ4G0Vx6Al
December 15, 2024 at 10:45 AM
Tomorrow! 👇 https://t.co/HQ4G0Vx6Al
Beautiful sunsets from @MPI_Biochem 😍 https://t.co/PnjHhSmuBE
December 15, 2024 at 10:45 AM
Beautiful sunsets from @MPI_Biochem 😍 https://t.co/PnjHhSmuBE