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ykiguchi.bsky.social
Yuya Kiguchi
@ykiguchi.bsky.social
26 followers 17 following 2 posts
PostDoc at Bhatt lab in the Stanford University.
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Reposted by Yuya Kiguchi
jimshaw.bsky.social
Jim Shaw @jimshaw.bsky.social · Sep 7
Preprint out for myloasm, our new nanopore / HiFi metagenome assembler!

Nanopore's getting accurate, but

1. Can this lead to better metagenome assemblies?
2. How, algorithmically, to leverage them?

with co-author Max Marin @mgmarin.bsky.social, supervised by Heng Li @lh3lh3.bsky.social

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biorxiv-bioinfo.bsky.social
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · Sep 7
High-resolution metagenome assembly for modern long reads with myloasm https://www.biorxiv.org/content/10.1101/2025.09.05.674543v1
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ykiguchi.bsky.social
Yuya Kiguchi @ykiguchi.bsky.social · Aug 15
We thank all corroborators involved in this study!
ykiguchi.bsky.social
Yuya Kiguchi @ykiguchi.bsky.social · Aug 15
We are happy to announce that our latest manuscript has been published in Nature Communications! We identified the highly abundant and prevalent (>70% in population) giant (Max. 395kb) extrachromosomal element in the human mouth, named "Inocle".
www.nature.com/articles/s41...
Giant extrachromosomal element “Inocle” potentially expands the adaptive capacity of the human oral microbiome - Nature Communications
This study identified prevalent giant extrachromosomal elements from the human oral microbiome. The genetic and ecological analysis provides insight on the potential contribution of this element in ad...
www.nature.com
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