Ryo Yokoyama
@yokoyama-ryo.bsky.social
760 followers 130 following 800 posts
University of Missouri / Photosynthesis, chloroplast, metabolomics / Kyoto🇯🇵⏩Madison, WI🇺🇸⏩MPI-Potsdam🇩🇪⏩Columbia, MO🇺🇸 / X(Twitter) @yokoyama_ryo https://sites.google.com/view/ry-plant
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Truly honored to receive this year’s TPJ-PSNA Early Career Award at the PSNA annual meeting in Toronto! Huge thanks to all the mentors, colleagues, and collaborators who have supported me along the way.
yokoyama-ryo.bsky.social
Once again, it’s a great honor to receive the TPJ-PSNA Early Career Award! My heartfelt thanks to all the mentors, colleagues, and collaborators who have supported me along the way.
theplantjournal.bsky.social
Meet the 𝐰𝐢𝐧𝐧𝐞𝐫𝐬 𝐨𝐟 𝟐𝟎𝟐𝟓 𝐓𝐏𝐉-𝐏𝐒𝐍𝐀 𝐀𝐰𝐚𝐫𝐝𝐬 🏆
This award recognizes outstanding postdocs and research scientists, with preference for early-career researchers ready to launch independent labs:
💠Ryo Yokoyama @yokoyama-ryo.bsky.social
💠 Boaz Negin
CONGRATULATIONS!

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Editing of rice PSEUDO-ETIOLATION IN LIGHT microProtein genes promotes chloroplast development academic.oup.com/plcell/artic...
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A perspective: A biochemical model of photosynthetic CO2 assimilation in leaves of C3 species link.springer.com/article/10.1...
A perspective: A biochemical model of photosynthetic CO2 assimilation in leaves of C3 species (Planta 149, 78–90) - Planta
The model of C3 photosynthesis of Farquhar et al. (1980) integrated knowledge of the functioning of the biochemical components of photosynthetic carbon assimilation in C3 plants. The model linked equations describing activated Rubisco kinetics with those on the stoichiometry of the photosynthetic carbon reduction cycle and the photorespiratory carbon oxidation cycle, particularly on their energetic (electron transport, ATP synthesis and NADPH) requirements. It included temperature dependencies of these processes and combined them with a semi-empirical equation for the dependence of potential electron transport rate on absorbed irradiance. The model aimed to match generalized observations of photosynthetic gas exchange of leaves with predictions from this mathematical summary of photosynthesis. In this model, we introduced the hypothesis that the rate of Rubisco carboxylation could not exceed the capacity for RuP2 regeneration or the enzymatic capacity to consume RuP2, and that the system behaved as a teeter-totter (see-saw) with a sharp transition from one limiting state to the other. We suggested that to model genotypic and phenotypic variations amongst leaves most parameters could be assigned a priori and only the maximum Rubisco activity (Vcmax) and the maximal electron transport rate, Jmax, needed to be varied. This simplicity of use led to the wider spread application and success of the model.
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Rubisco-Centric Strategies for Carbon Conservation in Synthetic Biology | Journal of Agricultural and Food Chemistry pubs.acs.org/doi/10.1021/...
Rubisco-Centric Strategies for Carbon Conservation in Synthetic Biology
The escalating global climate crisis urgently demands biomanufacturing technologies with higher carbon efficiency. Ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco), the central enzyme catalyzing carbon dioxide fixation in the Calvin–Benson cycle, exhibits low efficiency, thereby limiting its industrial application. This review summarizes fundamental Rubisco research, laying the foundation for its efficiency-enhancing engineering and biomanufacturing applications. We first outline the discovery, systematic classification, and molecular evolution of Rubisco, and then elucidate the structural dynamics underlying its activation and inhibition mechanisms. Subsequently, we provide the first systematic synthesis of five enzyme-efficiency enhancement strategies, spanning classical directed evolution to artificial intelligence-driven rational design. Recent advances in the utilization of Rubisco by autotrophic and heterotrophic microorganisms for the synthesis of biobased products are also critically examined. The resulting cross-scale design framework integrates evolutionary biology, structural dynamics, and synthetic biology, offering an extensible paradigm for sustainable, carbon-neutral biomanufacturing.
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High conservation of translation-enabling RNA editing sites in hyper-editing ferns implies they are not selectively neutral academic.oup.com/mbe/article/... @molbioevol.bsky.social
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Further evidence supporting the existence and accumulation of triacylglycerol and acylplastoquinol in cyanobacteria academic.oup.com/plphys/artic... @plantphys.bsky.social
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