zaira seferbekova 👩🏻‍💻
@zaira-sef.bsky.social
12 followers 69 following 9 posts
#braintumours 🧠 & #spatialomics 🚀 | visuals & organisation | 🏋🏻‍♀️🎨 🌈 🐈‍⬛ 🦅 | she/her 💅🏻 currently phd @ dkfz w/ moritz gerstung | fbb msu alum
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zaira-sef.bsky.social
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🙏 a special thanks to @abigailsuwala.bsky.social, @moritzgerstung.bsky.social, and Felix Sahm for their exceptional guidance and mentorship throughout this project. and heartfelt thanks to all our co-authors for valuable contributions and discussions!
zaira-sef.bsky.social
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💭 together, these results highlight how tumour–immune cell interactions shape radiation-induced brain changes, distinct from true progression.

our work provides a molecular foundation to improve diagnostics and treatment in GB patients.
zaira-sef.bsky.social
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in RN:

🔍 high numbers of tumour cells with low EGFR expression and no proliferation despite EGFR amplification.

🔍 the tumour cells colocalised with infiltrating border-associated macrophages releasing cytokines, likely contributing to gliosis.
zaira-sef.bsky.social
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🧠 our key findings:

in recurrent GB, we found progenitor and proliferating tumour cells with high EGFR expression.
zaira-sef.bsky.social
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🎨 we built a spatially resolved single cell atlas of ~1,19M cells encompassing nine cell types –– the first of its kind directly comparing histologically confirmed RN changes and recurrence in GB.
zaira-sef.bsky.social
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🔦 we analysed 10 samples from 9 GB patients who all showed radiological progression. however, histopathology revealed:
🧠 4 true recurrences
🔬 4 RN changes
🖇️ 1 mixed case
we profiled these with 10x Xenium and the Brain Expression Panel.
zaira-sef.bsky.social
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💡 why this matters?
radiotherapy is standard treatment for GB, but it can cause RN changes that mimic tumour progression on MRI and cause similar symptoms – yet require very different management. hence, histopathology remains the diagnostic gold standard.
zaira-sef.bsky.social
🚨 new glioblastoma preprint alert!

we present the first spatially resolved single cell atlas comparing radionecrotic changes (RN) and recurrent IDH-wildtype glioblastoma (GB) –– shedding light on a long-standing diagnostic challenge.

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