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Zuse Institute Berlin @zuseinstitute.bsky.social · Aug 7

Dynamics of systems with varying number of particles: from Liouville equations to general master equations for open systems. Publication (co)authored by Zuse Institute members. In: SciPost Physics, doi.org/10.21468/Sci...

SciPost: SciPost Phys. 18, 001 (2025) - Dynamics of systems with varying number of particles: From Liouville equations to general master equations for open systems

SciPost Journals Publication Detail SciPost Phys. 18, 001 (2025) Dynamics of systems with varying number of particles: From Liouville equations to general master equations for open systems

doi.org

Zuse Institute Berlin @zuseinstitute.bsky.social · Aug 7

A connectomic resource for neural cataloguing and circuit dissection of the larval zebrafish brain. Publication (co)authored by Zuse Institute members. In: bioRxiv, doi.org/10.1101/2025...

A connectomic resource for neural cataloguing and circuit dissection of the larval zebrafish brain

We present a correlated light and electron microscopy (CLEM) dataset from a 7-day-old larval zebrafish, integrating confocal imaging of genetically labeled excitatory ( vglut2a ) and inhibitory ( gad1...

doi.org

Zuse Institute Berlin @zuseinstitute.bsky.social · Aug 7

Risk aversion can promote cooperation. Publication (co)authored by Zuse Institute members. In: Journal of Physics: Complexity, doi.org/10.1088/2632...

Risk aversion can promote cooperation - IOPscience

Risk aversion can promote cooperation, Armas, Jay, Merbis, Wout, Meylahn, Janusz M, Rafiee Rad, Soroush, del Razo, Mauricio J

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Zuse Institute Berlin @zuseinstitute.bsky.social · Aug 7

Blobby is a synaptic active zone assembly protein required for memory in Drosophila. Publication (co)authored by Zuse Institute members. In: Nature Communications, doi.org/10.1038/s414...

Blobby is a synaptic active zone assembly protein required for memory in Drosophila - Nature Communications

The active zone is a brain signaling hub critical for synaptic information transfer and the encoding of behaviors. The authors identify Blobby as an assembly factor required for proper active zone nan...

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Zuse Institute Berlin @zuseinstitute.bsky.social · Aug 7

Chiral Plasmonic Crystals Self-Assembled by DNA Origami. Publication (co)authored by Zuse Institute members. In: J. Phys. Chem. C, doi.org/10.1021/acs....

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Zuse Institute Berlin @zuseinstitute.bsky.social · Aug 7

Multi-grid reaction-diffusion master equation: applications to morphogen gradient modelling. Publication (co)authored by Zuse Institute members. In: Bulletin of Mathematical Biology, doi.org/10.1007/s115...

Multi-Grid Reaction-Diffusion Master Equation: Applications to Morphogen Gradient Modelling - Bulletin of Mathematical Biology

The multi-grid reaction-diffusion master equation (mgRDME) provides a generalization of stochastic compartment-based reaction-diffusion modelling described by the standard reaction-diffusion master eq...

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Zuse Institute Berlin @zuseinstitute.bsky.social · Aug 7

High-dimensional high-frequency time series prediction with a mixed integer optimisation method. Publication (co)authored by Zuse Institute members. In: Operations Research Proceedings 2023. OR 2023, doi.org/10.1007/978-...

High-Dimensional High-Frequency Time Series Prediction with a Mixed Integer Optimisation Method

We study a functional autoregressive model for high-frequency time series. We approach the estimation of the proposed model using a Mixed Integer Optimisation method. The proposed model captures seria...

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Zuse Institute Berlin @zuseinstitute.bsky.social · Aug 7

Predicting Fluid Interface Instability in Energy Systems for Sustainable Energy Transition. Publication (co)authored by Zuse Institute members. In: Operations Research Proceedings 2023. OR 2023., doi.org/10.1007/978-...

Predicting Fluid Interface Instability in Energy Systems for Sustainable Energy Transition

Due to the coexistence of different gases in underground storage, this work explores the interface stability’s impact on energy storage, specifically during the injection and withdrawal of gases...

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Zuse Institute Berlin @zuseinstitute.bsky.social · Aug 7

Uncovering hidden resonances in non-Hermitian systems with scattering thresholds. Publication (co)authored by Zuse Institute members. In: Laser Photonics Rev., doi.org/10.1002/lpor...

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Zuse Institute Berlin @zuseinstitute.bsky.social · Aug 7

Leveraging Transfer Learning to Overcome Data Limitations in Czochralski Crystal Growth. Publication (co)authored by Zuse Institute members. In: Advanced Theory and Simulations, doi.org/10.1002/adts...

Leveraging Transfer Learning to Overcome Data Limitations in Czochralski Crystal Growth

A data-driven framework combining Computational Fluid Dynamics (CFD) simulations and machine learning is proposed to model and optimize Czochralski crystal growth. Using different transfer learning s...

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Zuse Institute Berlin @zuseinstitute.bsky.social · Aug 7

#MasterThesis opportunity "3D Shape Completion for Individualized Implant Design" @ ZIB research group "Computational Diagnosis and Therapy Planning"
#MedicalImaging #3DReconstruction #DeepLearning #NumericalMathematics
www.zib.de/thesis/3d-sh...

Zuse Institute Berlin @zuseinstitute.bsky.social · Jul 30

Dynamics of systems with varying number of particles: from Liouville equations to general master equations for open systems. Publication (co)authored by Zuse Institute members. In: SciPost Physics, doi.org/10.21468/Sci...

SciPost: SciPost Phys. 18, 001 (2025) - Dynamics of systems with varying number of particles: From Liouville equations to general master equations for open systems

SciPost Journals Publication Detail SciPost Phys. 18, 001 (2025) Dynamics of systems with varying number of particles: From Liouville equations to general master equations for open systems

doi.org

Zuse Institute Berlin @zuseinstitute.bsky.social · Jul 30

Integrating Agent-Based and Compartmental Models for Infectious Disease Modeling: A Novel Hybrid Approach. Publication (co)authored by Zuse Institute members. In: Journal of Artificial Societies and Social Simulation, doi.org/10.18564/jas...

Integrating Agent-Based and Compartmental Models for Infectious Disease Modeling: A Novel Hybrid Approach

by Inan Bostanci and Tim Conrad

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Zuse Institute Berlin @zuseinstitute.bsky.social · Jul 30

Resonance modes in microstructured photonic waveguides: Efficient and accurate computation based on AAA rational approximation. Publication (co)authored by Zuse Institute members. In: Nanophotonics, doi.org/10.1515/nano...

Resonance modes in microstructured photonic waveguides: efficient and accurate computation based on AAA rational approximation

We present a framework for the efficient and accurate computation of resonance modes in photonic waveguides. The framework is based on AAA rational approximation with the application of special light ...

doi.org

Zuse Institute Berlin @zuseinstitute.bsky.social · Jul 30

A Case Study of the Use of Logical Data Analysis in the Workmen's Village in Tell el-Amarna, Egypt. Publication (co)authored by Zuse Institute members. In: it - Information Technology, doi.org/10.1515/itit...

A case study of the use of logical data analysis in the Workmen’s Village in Tell el-Amarna, Egypt

The search for patterns in archaeological contexts is crucial to understanding ancient civilizations, including the organization of their societies and economies. This study focuses on the interdiscip...

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Zuse Institute Berlin @zuseinstitute.bsky.social · Jul 30

Optics for terawatt-scale photovoltaics: review and perspectives. Publication (co)authored by Zuse Institute members. In: Adv. Opt. Photonics, doi.org/10.1364/AOP....

Optics for terawatt-scale photovoltaics: review and perspectives

Photovoltaics, a mature technology, is set to play a vital role in achieving a carbon-free energy system. This article examines the pivotal role of optics in advancing photovoltaics. We identify key s...

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Zuse Institute Berlin @zuseinstitute.bsky.social · Jul 30

Efficient construction of Markov state models for stochastic gene regulatory networks by domain decomposition. Publication (co)authored by Zuse Institute members. In: BMC Bioinformatics, doi.org/10.1186/s128...

Efficient construction of Markov state models for stochastic gene regulatory networks by domain decomposition - BMC Bioinformatics

Background The dynamics of many gene regulatory networks (GRNs) is characterized by the occurrence of metastable phenotypes and stochastic phenotype switches. The chemical master equation (CME) is the...

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Zuse Institute Berlin @zuseinstitute.bsky.social · Jul 30

Approximating particle-based clustering dynamics by stochastic PDEs. Publication (co)authored by Zuse Institute members. In: SIAM Journal on Applied Dynamical Systems, doi.org/10.1137/24M1...

Approximating Particle-Based Clustering Dynamics by Stochastic PDEs | SIAM Journal on Applied Dynamical Systems

Abstract. This work proposes stochastic partial differential equations (SPDEs) as a practical tool to replicate clustering effects of more detailed particle-based dynamics. Inspired by membrane-mediat...

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Zuse Institute Berlin @zuseinstitute.bsky.social · Jul 30

On finding optimal collective variables for complex systems by minimizing the deviation between effective and full dynamics. Publication (co)authored by Zuse Institute members. In: Multiscale Modeling and Simulation, doi.org/10.1137/24M1...

The Society for Industrial and Applied Mathematics

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Zuse Institute Berlin @zuseinstitute.bsky.social · Jul 30

Splitting the conditional gradient algorithm. Publication (co)authored by Zuse Institute members. In: SIAM Journal on Optimization, doi.org/10.1137/24M1...

The Society for Industrial and Applied Mathematics

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Zuse Institute Berlin @zuseinstitute.bsky.social · Jul 30

Independently engaging protein tethers of different length enhance synaptic vesicle trafficking to the plasma membrane. Publication (co)authored by Zuse Institute members. In: The Journal of Physiology, doi.org/10.1113/JP28...

Independently engaging protein tethers of different length enhance synaptic vesicle trafficking to the plasma membrane

Abstract figure legend The independent assembly of the protein tethers synaptotagmin (Syt1/2), Munc13 and the SNAREs (upper) affects the stochastic movement of a synaptic vesicle (SV) with respect to...

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Zuse Institute Berlin @zuseinstitute.bsky.social · Jul 30

The helmeted hornbill casque is reinforced by a bundle of exceptionally thick, rod-like trabeculae. Publication (co)authored by Zuse Institute members. In: Annals of the New York Academy of Sciences, doi.org/10.1111/nyas...

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Zuse Institute Berlin @zuseinstitute.bsky.social · Jul 30

A Scalable System for Visual Analysis of Ocean Data. Publication (co)authored by Zuse Institute members. In: Computer Graphics Forum, doi.org/10.1111/cgf....

A Scalable System for Visual Analysis of Ocean Data

pyParaOcean is a system for interactive exploration and visual analysis of ocean data. The system leverages the functionalities of ParaView to enable scalable visualizations of data available from hi...

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Zuse Institute Berlin @zuseinstitute.bsky.social · Jul 30

Macroscopic Stochastic Model for Economic Cycle Dynamics. Publication (co)authored by Zuse Institute members. In: Physical Review Letters, doi.org/10.1103/Phys...

Macroscopic Stochastic Model for Economic Cycle Dynamics

We present a stochastic dynamic model which can explain economic cycles. We show that the macroscopic description yields a complex dynamical landscape consisting of multiple stable fixed points, each ...

doi.org

Zuse Institute Berlin @zuseinstitute.bsky.social · Jul 30

A connectomic resource for neural cataloguing and circuit dissection of the larval zebrafish brain. Publication (co)authored by Zuse Institute members. In: bioRxiv, doi.org/10.1101/2025...

A connectomic resource for neural cataloguing and circuit dissection of the larval zebrafish brain

We present a correlated light and electron microscopy (CLEM) dataset from a 7-day-old larval zebrafish, integrating confocal imaging of genetically labeled excitatory ( vglut2a ) and inhibitory ( gad1...

doi.org