Do you use R and the Barcode of Life Data (BOLD) Systems?
🎉 BOLDconnectR is now on CRAN!
BOLDconnectR makes it easy to retrieve, transform, and analyze BOLD data—all in the Barcode Core Data Model (BCDM) format.
#RStats #OpenSource #DNAbarcoding #ResearchInnovation
🎉 BOLDconnectR is now on CRAN!
BOLDconnectR makes it easy to retrieve, transform, and analyze BOLD data—all in the Barcode Core Data Model (BCDM) format.
#RStats #OpenSource #DNAbarcoding #ResearchInnovation
October 3, 2025 at 1:03 PM
Do you use R and the Barcode of Life Data (BOLD) Systems?
🎉 BOLDconnectR is now on CRAN!
BOLDconnectR makes it easy to retrieve, transform, and analyze BOLD data—all in the Barcode Core Data Model (BCDM) format.
#RStats #OpenSource #DNAbarcoding #ResearchInnovation
🎉 BOLDconnectR is now on CRAN!
BOLDconnectR makes it easy to retrieve, transform, and analyze BOLD data—all in the Barcode Core Data Model (BCDM) format.
#RStats #OpenSource #DNAbarcoding #ResearchInnovation
Are you an R user?
BOLDConnectR is a package that facilitates the retrieval, transformation, and analysis of both public and private data in BOLD. It was created because of the widespread use of R software by BOLD users, and enables the customization and repetition of workflows.
BOLDConnectR is a package that facilitates the retrieval, transformation, and analysis of both public and private data in BOLD. It was created because of the widespread use of R software by BOLD users, and enables the customization and repetition of workflows.
July 9, 2025 at 2:29 PM
Are you an R user?
BOLDConnectR is a package that facilitates the retrieval, transformation, and analysis of both public and private data in BOLD. It was created because of the widespread use of R software by BOLD users, and enables the customization and repetition of workflows.
BOLDConnectR is a package that facilitates the retrieval, transformation, and analysis of both public and private data in BOLD. It was created because of the widespread use of R software by BOLD users, and enables the customization and repetition of workflows.
Citation: Padhye S, Ballesteros-Mejia L, Ratnasingham S (2025). BOLDconnectR: Retrieve, Transform and Analyze the Barcode of Life Data Systems Data. R package version 1.0.0.
October 3, 2025 at 1:03 PM
Citation: Padhye S, Ballesteros-Mejia L, Ratnasingham S (2025). BOLDconnectR: Retrieve, Transform and Analyze the Barcode of Life Data Systems Data. R package version 1.0.0.
The BOLD Team is excited to announce BOLDconnectR is now on CRAN at cran.r-project.org/web/packages...
Below, one of the BOLDConnectR creators, Sameer Padhye, provides a demonstration for exploring and working with BOLD data in R.
#BOLDconnectR #CRAN #RStats #OpenSource
🎥 Watch the video here:
Below, one of the BOLDConnectR creators, Sameer Padhye, provides a demonstration for exploring and working with BOLD data in R.
#BOLDconnectR #CRAN #RStats #OpenSource
🎥 Watch the video here:
BOLDv5 workshop recording: BOLDConnectR
An edited recording from an online workshop covering the R package, BOLDConnectR. First, BOLD's co-founder Sujeevan Ratnasingham will introduce the package and then the BOLDConnectR creator, Sameer…
cran.r-project.org
October 15, 2025 at 5:05 PM
The BOLD Team is excited to announce BOLDconnectR is now on CRAN at cran.r-project.org/web/packages...
Below, one of the BOLDConnectR creators, Sameer Padhye, provides a demonstration for exploring and working with BOLD data in R.
#BOLDconnectR #CRAN #RStats #OpenSource
🎥 Watch the video here:
Below, one of the BOLDConnectR creators, Sameer Padhye, provides a demonstration for exploring and working with BOLD data in R.
#BOLDconnectR #CRAN #RStats #OpenSource
🎥 Watch the video here:
New CRAN package BOLDconnectR with initial version 1.0.0
#rstats
https://cran.r-project.org/package=BOLDconnectR
#rstats
https://cran.r-project.org/package=BOLDconnectR
CRAN: Package BOLDconnectR
Facilitates retrieval, transformation and analysis of the data from the Barcode of Life Data Systems (BOLD) database <<a href="https://boldsystems.org/" target="_top">https://boldsystems.org/</a>>. This package allows both public and private user data to be easily downloaded into the R environment using a variety of inputs such as: IDs (processid, sampleid), BINs, dataset codes, project codes, taxonomy, geography etc. It provides frictionless data conversion into formats compatible with other R-packages and third-party tools, as well as functions for sequence alignment & clustering, biodiversity analysis and spatial mapping.
cran.r-project.org
September 17, 2025 at 11:02 AM
New CRAN package BOLDconnectR with initial version 1.0.0
#rstats
https://cran.r-project.org/package=BOLDconnectR
#rstats
https://cran.r-project.org/package=BOLDconnectR
This package enables seamless downloading of data into the R environment using various inputs, including process IDs, sample IDs, taxonomy, and geography.
Explore BOLDConnectR on GitHub:
🔗 github.com/boldsystems-...
Explore BOLDConnectR on GitHub:
🔗 github.com/boldsystems-...
GitHub - boldsystems-central/BOLDconnectR: R package supporting interactive data access on BOLD
R package supporting interactive data access on BOLD - boldsystems-central/BOLDconnectR
github.com
July 9, 2025 at 2:29 PM
This package enables seamless downloading of data into the R environment using various inputs, including process IDs, sample IDs, taxonomy, and geography.
Explore BOLDConnectR on GitHub:
🔗 github.com/boldsystems-...
Explore BOLDConnectR on GitHub:
🔗 github.com/boldsystems-...
We attended a hands-on workshop about the BOLDconnectR package. The @boldsystems.bsky.social team showed us how to make things easier to retrieve-->annotate-->analyze data directly from BOLDv5
Visit the GitHub link for installation, key functions and tutorials: github.com/boldsystems-...
Visit the GitHub link for installation, key functions and tutorials: github.com/boldsystems-...
GitHub - boldsystems-central/BOLDconnectR: R package supporting interactive data access on BOLD
R package supporting interactive data access on BOLD - boldsystems-central/BOLDconnectR
github.com
February 25, 2025 at 6:21 PM
We attended a hands-on workshop about the BOLDconnectR package. The @boldsystems.bsky.social team showed us how to make things easier to retrieve-->annotate-->analyze data directly from BOLDv5
Visit the GitHub link for installation, key functions and tutorials: github.com/boldsystems-...
Visit the GitHub link for installation, key functions and tutorials: github.com/boldsystems-...
3/4
Some steps to get started:
1️⃣ Read through the extensive documentation available on GitHub: 🔗 github.com/boldsystems-...
2️⃣ Install the BOLDConnectR package, along with additional packages that are essential for select function: BiocManager, msa, Biostrings, ape, vegan, and dplyr.
Some steps to get started:
1️⃣ Read through the extensive documentation available on GitHub: 🔗 github.com/boldsystems-...
2️⃣ Install the BOLDConnectR package, along with additional packages that are essential for select function: BiocManager, msa, Biostrings, ape, vegan, and dplyr.
GitHub - boldsystems-central/BOLDconnectR: R package supporting interactive data access on BOLD
R package supporting interactive data access on BOLD - boldsystems-central/BOLDconnectR
github.com
April 14, 2025 at 12:55 PM
3/4
Some steps to get started:
1️⃣ Read through the extensive documentation available on GitHub: 🔗 github.com/boldsystems-...
2️⃣ Install the BOLDConnectR package, along with additional packages that are essential for select function: BiocManager, msa, Biostrings, ape, vegan, and dplyr.
Some steps to get started:
1️⃣ Read through the extensive documentation available on GitHub: 🔗 github.com/boldsystems-...
2️⃣ Install the BOLDConnectR package, along with additional packages that are essential for select function: BiocManager, msa, Biostrings, ape, vegan, and dplyr.
🧵1/4
Are you an R user?
BOLDConnectR is a package that facilitates the retrieval, transformation, and analysis of both public and private data in BOLD. It was created because of the widespread use of R software by BOLD users, and enables the customization and repetition of workflows.
#BOLD
Are you an R user?
BOLDConnectR is a package that facilitates the retrieval, transformation, and analysis of both public and private data in BOLD. It was created because of the widespread use of R software by BOLD users, and enables the customization and repetition of workflows.
#BOLD
April 14, 2025 at 12:55 PM
🧵1/4
Are you an R user?
BOLDConnectR is a package that facilitates the retrieval, transformation, and analysis of both public and private data in BOLD. It was created because of the widespread use of R software by BOLD users, and enables the customization and repetition of workflows.
#BOLD
Are you an R user?
BOLDConnectR is a package that facilitates the retrieval, transformation, and analysis of both public and private data in BOLD. It was created because of the widespread use of R software by BOLD users, and enables the customization and repetition of workflows.
#BOLD
The CRAN documentation is up to date and we invite you to explore what BOLDconnectR can do for your workflow: cran.r-project.org/web/packages...
BOLDconnectR: Retrieve, Transform and Analyze the Barcode of Life Data Systems Data
Facilitates retrieval, transformation and analysis of the data from the Barcode of Life Data Systems (BOLD) database <<a href="https://boldsystems.org/" target="_top">https://boldsystems.org/</a>>.…
cran.r-project.org
October 3, 2025 at 1:03 PM
The CRAN documentation is up to date and we invite you to explore what BOLDconnectR can do for your workflow: cran.r-project.org/web/packages...
For those who have attended a BOLDv5 introductory webinar, we are hosting hands-on workshops on specialized topics. This month, we’re offering two BOLDConnectR workshops, limited to 20 participants each for personalized guidance.
2/3
2/3
February 12, 2025 at 5:26 PM
For those who have attended a BOLDv5 introductory webinar, we are hosting hands-on workshops on specialized topics. This month, we’re offering two BOLDConnectR workshops, limited to 20 participants each for personalized guidance.
2/3
2/3
5/6
8: ID engine – Enhancements to the sequence identification pipeline.
9: Data portal – Tools for exploring and retrieving barcode data.
10: Data workflow – End-to-end flow: specimen, sequence, submission.
11: BOLDConnectR – Programmatic access to BOLDv5 using R.
8: ID engine – Enhancements to the sequence identification pipeline.
9: Data portal – Tools for exploring and retrieving barcode data.
10: Data workflow – End-to-end flow: specimen, sequence, submission.
11: BOLDConnectR – Programmatic access to BOLDv5 using R.
April 30, 2025 at 4:40 PM
5/6
8: ID engine – Enhancements to the sequence identification pipeline.
9: Data portal – Tools for exploring and retrieving barcode data.
10: Data workflow – End-to-end flow: specimen, sequence, submission.
11: BOLDConnectR – Programmatic access to BOLDv5 using R.
8: ID engine – Enhancements to the sequence identification pipeline.
9: Data portal – Tools for exploring and retrieving barcode data.
10: Data workflow – End-to-end flow: specimen, sequence, submission.
11: BOLDConnectR – Programmatic access to BOLDv5 using R.
New on CRAN: BOLDconnectR (1.0.0). View at https://CRAN.R-project.org/package=BOLDconnectR
BOLDconnectR: Retrieve, Transform and Analyze the Barcode of Life Data Systems Data
Facilitates retrieval, transformation and analysis of the data from the Barcode of Life Data Systems (BOLD) database <<a href="https://boldsystems.org/" target="_top">https://boldsystems.org/</a>>. This package allows both public and private user data to be easily downloaded into the R environment using a variety of inputs such as: IDs (processid, sampleid), BINs, dataset codes, project codes, taxonomy, geography etc. It provides frictionless data conversion into formats compatible with other R-packages and third-party tools, as well as functions for sequence alignment & clustering, biodiversity analysis and spatial mapping.
CRAN.R-project.org
September 17, 2025 at 1:22 PM
New on CRAN: BOLDconnectR (1.0.0). View at https://CRAN.R-project.org/package=BOLDconnectR