Janelia is hosting a course on DL for bioimage analysis www.janelia.org/you-janelia/...
Deep Learning for Microscopy Image Analysis
Topics The following will be covered extensively during lectures, exercises, and project work: Image denoising and restoration (fully supervised and self-supervised) Image translation (e.g.,
www.janelia.org
November 6, 2025 at 5:02 PM
Janelia is hosting a course on DL for bioimage analysis www.janelia.org/you-janelia/...
5 more days to apply for bioimage analyst position at the beautiful city of Helsinki
🚀Join Helsinki BioImaging as an Image Analysis Specialist🖥️to support cross-disciplinary image analysis projects. If you love coding and are interested in working at the crossroads of computer science and biology, apply by 🗓️ November 15, 2025⤵️
jobs.helsinki.fi/job/Helsinki...
#jobopening
jobs.helsinki.fi/job/Helsinki...
#jobopening
Image Analysis Specialist/Engineer/Coordinator, Helsinki Bioimaging
Image Analysis Specialist/Engineer/Coordinator, Helsinki Bioimaging
jobs.helsinki.fi
November 10, 2025 at 8:19 AM
5 more days to apply for bioimage analyst position at the beautiful city of Helsinki
📢 Enhance your bioimage analysis skills - 2-day hands-on napari workshop.
Learn to:
- Set up conda envis install napari
- Navigate napari GUI install plugins
- Jupyter notebooks for basic IA
- Apply new skills to real datasets w expert guidance
📅 Apply by NOW!
www.crick.ac.uk/whats-on/cbi...
Learn to:
- Set up conda envis install napari
- Navigate napari GUI install plugins
- Jupyter notebooks for basic IA
- Apply new skills to real datasets w expert guidance
📅 Apply by NOW!
www.crick.ac.uk/whats-on/cbi...
CBIAS napari workshop 2025
www.crick.ac.uk
November 7, 2025 at 10:49 AM
📢 Enhance your bioimage analysis skills - 2-day hands-on napari workshop.
Learn to:
- Set up conda envis install napari
- Navigate napari GUI install plugins
- Jupyter notebooks for basic IA
- Apply new skills to real datasets w expert guidance
📅 Apply by NOW!
www.crick.ac.uk/whats-on/cbi...
Learn to:
- Set up conda envis install napari
- Navigate napari GUI install plugins
- Jupyter notebooks for basic IA
- Apply new skills to real datasets w expert guidance
📅 Apply by NOW!
www.crick.ac.uk/whats-on/cbi...
🔥 Innovation at #SPAOM2025!
From Hot Topics in #Bioimage Analysis & #AI 🤖🔬 to Industry Talks & Pitches, today’s sessions showed how science and technology unite to transform #imaging and discovery!
Thanks to all speakers, sponsors & participants for the inspiring discussions 🙌✨
#Microscopy #SPAOM
From Hot Topics in #Bioimage Analysis & #AI 🤖🔬 to Industry Talks & Pitches, today’s sessions showed how science and technology unite to transform #imaging and discovery!
Thanks to all speakers, sponsors & participants for the inspiring discussions 🙌✨
#Microscopy #SPAOM
November 5, 2025 at 6:13 PM
🔥 Innovation at #SPAOM2025!
From Hot Topics in #Bioimage Analysis & #AI 🤖🔬 to Industry Talks & Pitches, today’s sessions showed how science and technology unite to transform #imaging and discovery!
Thanks to all speakers, sponsors & participants for the inspiring discussions 🙌✨
#Microscopy #SPAOM
From Hot Topics in #Bioimage Analysis & #AI 🤖🔬 to Industry Talks & Pitches, today’s sessions showed how science and technology unite to transform #imaging and discovery!
Thanks to all speakers, sponsors & participants for the inspiring discussions 🙌✨
#Microscopy #SPAOM
#GloBIAS2025 is ongoing with amazing speaker lineups at Kobe city
Beautiful location, amazing food and warm bioimage analysis community. What wlse does one need? 😊
Thanks to @globias.bsky.social for this event
Beautiful location, amazing food and warm bioimage analysis community. What wlse does one need? 😊
Thanks to @globias.bsky.social for this event
October 30, 2025 at 2:12 AM
#GloBIAS2025 is ongoing with amazing speaker lineups at Kobe city
Beautiful location, amazing food and warm bioimage analysis community. What wlse does one need? 😊
Thanks to @globias.bsky.social for this event
Beautiful location, amazing food and warm bioimage analysis community. What wlse does one need? 😊
Thanks to @globias.bsky.social for this event
💡Just presented our new paper at the @iccv.bsky.social BioImage Computing workshop: cubic: CUDA-accelerated 3D Bioimage Computing. We introduce a simple way to add GPU acceleration to scikit-image–based bioimage processing pipelines by swapping import statements. 🧵
1/6 #iccv2025
1/6 #iccv2025
October 23, 2025 at 6:01 PM
💡Just presented our new paper at the @iccv.bsky.social BioImage Computing workshop: cubic: CUDA-accelerated 3D Bioimage Computing. We introduce a simple way to add GPU acceleration to scikit-image–based bioimage processing pipelines by swapping import statements. 🧵
1/6 #iccv2025
1/6 #iccv2025
Yay for more accessible tools, Ricardo, congrats on bringing it all together! Hope to see the models in the BioImage Model Zoo soon ;)
October 22, 2025 at 2:17 PM
Yay for more accessible tools, Ricardo, congrats on bringing it all together! Hope to see the models in the BioImage Model Zoo soon ;)
Big news! Our week-long #bioimageanalysis bootcamp is BACK! Learn how to think about bioimage analysis like the pros do, learn what corrections you should (and shouldn't!) apply to your images, learn open source tools, and more. Apply NOW at broad.io/BAB3 for our January 2026 course!
October 14, 2025 at 9:31 PM
Big news! Our week-long #bioimageanalysis bootcamp is BACK! Learn how to think about bioimage analysis like the pros do, learn what corrections you should (and shouldn't!) apply to your images, learn open source tools, and more. Apply NOW at broad.io/BAB3 for our January 2026 course!
We recently had the pleasure of chatting about the newly published MIFA guidelines, which aim to improve how we share AI-ready datasets for bioimage analysis.
Huge thanks to Joshua Talks and @rodrigofg.bsky.social for sharing the user perspective — check out the interview below!
Huge thanks to Joshua Talks and @rodrigofg.bsky.social for sharing the user perspective — check out the interview below!
AI has so much potential for interpreting biological images, and yet, annotated biological datasets needed to train AI tools remain scarce.
If you generate microscopy data or develop AI tools to interpret it, check it these new guidelines:
www.ebi.ac.uk/about/news/t...
#bioimaging #microscopy
🧬🔬
If you generate microscopy data or develop AI tools to interpret it, check it these new guidelines:
www.ebi.ac.uk/about/news/t...
#bioimaging #microscopy
🧬🔬
October 13, 2025 at 3:17 PM
We recently had the pleasure of chatting about the newly published MIFA guidelines, which aim to improve how we share AI-ready datasets for bioimage analysis.
Huge thanks to Joshua Talks and @rodrigofg.bsky.social for sharing the user perspective — check out the interview below!
Huge thanks to Joshua Talks and @rodrigofg.bsky.social for sharing the user perspective — check out the interview below!
All of the segmentation and morphometric analysis was done with the open-source platform QuPath. The scripts I wrote are on Github and the raw images are on the BioImage Archive, because open-source is the way to go!
But seriously, look at these cells! They are so angry.
But seriously, look at these cells! They are so angry.
October 8, 2025 at 5:18 PM
All of the segmentation and morphometric analysis was done with the open-source platform QuPath. The scripts I wrote are on Github and the raw images are on the BioImage Archive, because open-source is the way to go!
But seriously, look at these cells! They are so angry.
But seriously, look at these cells! They are so angry.
What an amazing opportunity to do impactful work in bioimage analysis!!!!
Job alert!
We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks?
See also on the forum:
forum.image.sc/t/research-e...
We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks?
See also on the forum:
forum.image.sc/t/research-e...
Research engineer in Bioimage Analysis for the researchers of the inIdEx FORMULA
Hi all We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks? The position is in the Instit...
forum.image.sc
October 7, 2025 at 1:19 PM
What an amazing opportunity to do impactful work in bioimage analysis!!!!
Job alert!
We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks?
See also on the forum:
forum.image.sc/t/research-e...
We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks?
See also on the forum:
forum.image.sc/t/research-e...
Research engineer in Bioimage Analysis for the researchers of the inIdEx FORMULA
Hi all We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks? The position is in the Instit...
forum.image.sc
October 7, 2025 at 12:39 PM
Job alert!
We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks?
See also on the forum:
forum.image.sc/t/research-e...
We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks?
See also on the forum:
forum.image.sc/t/research-e...
Hey microscopists! On behalf of @ausbias.org I'd like to invite you to fill in our inaugural survey of how you perform and interface with bioimage analysis in your work! Help shape our society, and help us understand how we can best serve the wider microscopy community! ausbias.org/survey-2025/
October 8, 2025 at 12:02 AM
Hey microscopists! On behalf of @ausbias.org I'd like to invite you to fill in our inaugural survey of how you perform and interface with bioimage analysis in your work! Help shape our society, and help us understand how we can best serve the wider microscopy community! ausbias.org/survey-2025/
🌟 Announcing Prof. Arrate Muñoz-Barrutia as a Plenary Speaker at #SPAOM2025!
She’s leading the way in 🧠 AI + 🔬 bioimage analysis to transform how we detect and treat disease.
Don’t miss her in “Hot Topics in Bioimage Analysis and AI” 🤖📊
#Microscopy #AIinScience #LifeSciences #WomenInSTEM
She’s leading the way in 🧠 AI + 🔬 bioimage analysis to transform how we detect and treat disease.
Don’t miss her in “Hot Topics in Bioimage Analysis and AI” 🤖📊
#Microscopy #AIinScience #LifeSciences #WomenInSTEM
October 7, 2025 at 2:51 PM
🌟 Announcing Prof. Arrate Muñoz-Barrutia as a Plenary Speaker at #SPAOM2025!
She’s leading the way in 🧠 AI + 🔬 bioimage analysis to transform how we detect and treat disease.
Don’t miss her in “Hot Topics in Bioimage Analysis and AI” 🤖📊
#Microscopy #AIinScience #LifeSciences #WomenInSTEM
She’s leading the way in 🧠 AI + 🔬 bioimage analysis to transform how we detect and treat disease.
Don’t miss her in “Hot Topics in Bioimage Analysis and AI” 🤖📊
#Microscopy #AIinScience #LifeSciences #WomenInSTEM
Our latest preprint list is now up on FocalPlane. This week we focus on new research in bioimage analysis: focalplane.biologists.com/2025/10/03/m...
Let us know if you’ve come across a preprint that we’ve missed and we’ll add it to the list!
Let us know if you’ve come across a preprint that we’ve missed and we’ll add it to the list!
Microscopy preprints - bioimage analysis - FocalPlane
Microscopy preprints - bioimage analysis - News
focalplane.biologists.com
October 3, 2025 at 1:33 PM
Our latest preprint list is now up on FocalPlane. This week we focus on new research in bioimage analysis: focalplane.biologists.com/2025/10/03/m...
Let us know if you’ve come across a preprint that we’ve missed and we’ll add it to the list!
Let us know if you’ve come across a preprint that we’ve missed and we’ll add it to the list!
I forgot that I had this made. As a prototype that never went into full production, it's the only one in existence and, therefore, highly desirable.
Let's start the bidding at £1,809, £1 for every day since the very first CBIAS.
For an extra 50%, you can have it signed by @martinjones.bsky.social.
Let's start the bidding at £1,809, £1 for every day since the very first CBIAS.
For an extra 50%, you can have it signed by @martinjones.bsky.social.
October 3, 2025 at 7:48 AM
I forgot that I had this made. As a prototype that never went into full production, it's the only one in existence and, therefore, highly desirable.
Let's start the bidding at £1,809, £1 for every day since the very first CBIAS.
For an extra 50%, you can have it signed by @martinjones.bsky.social.
Let's start the bidding at £1,809, £1 for every day since the very first CBIAS.
For an extra 50%, you can have it signed by @martinjones.bsky.social.
Save the date for the panel discussion “The Power of Sharing: Open Data in Bioimage Analysis” on October 24, 2025. 🤝
The discussion with experts from various fields related to imaging is organized by Young Microscopists and Image Analysts (YMIA).
Register here:
👉 gerbi-gmb.de/machform/vie...
The discussion with experts from various fields related to imaging is organized by Young Microscopists and Image Analysts (YMIA).
Register here:
👉 gerbi-gmb.de/machform/vie...
October 1, 2025 at 1:06 PM
Save the date for the panel discussion “The Power of Sharing: Open Data in Bioimage Analysis” on October 24, 2025. 🤝
The discussion with experts from various fields related to imaging is organized by Young Microscopists and Image Analysts (YMIA).
Register here:
👉 gerbi-gmb.de/machform/vie...
The discussion with experts from various fields related to imaging is organized by Young Microscopists and Image Analysts (YMIA).
Register here:
👉 gerbi-gmb.de/machform/vie...
📣 We’re hiring, please RT! Fully funded 4-year PhD position in our CVPD group at @informatikaehu.bsky.social!
Research at the intersection of AI, deep learning & bioimage analysis. 🧠🔬
📅 Applications open Oct 6 (deadline: ~Oct 27)
📍 San Sebastian, Spain.
👉 cvpd.github.io/post/2025-09...
Research at the intersection of AI, deep learning & bioimage analysis. 🧠🔬
📅 Applications open Oct 6 (deadline: ~Oct 27)
📍 San Sebastian, Spain.
👉 cvpd.github.io/post/2025-09...
📢 Open 4-year PhD Position in Deep Learning for Bioimage Analysis! | CVPD Research group
The Computer Vision and Pattern Discovery (CVPD) group at the University of the Basque Country (UPV/EHU) is offering a fully funded 4-year PhD position within the recently awarded project TOSBI: Towar...
cvpd.github.io
September 30, 2025 at 11:01 AM
📣 We’re hiring, please RT! Fully funded 4-year PhD position in our CVPD group at @informatikaehu.bsky.social!
Research at the intersection of AI, deep learning & bioimage analysis. 🧠🔬
📅 Applications open Oct 6 (deadline: ~Oct 27)
📍 San Sebastian, Spain.
👉 cvpd.github.io/post/2025-09...
Research at the intersection of AI, deep learning & bioimage analysis. 🧠🔬
📅 Applications open Oct 6 (deadline: ~Oct 27)
📍 San Sebastian, Spain.
👉 cvpd.github.io/post/2025-09...
BioImage analysis friends - King's are recruiting for a full-time, permanent facility position! Come and work with fun microscopes and fun people (and me!) - please share! www.kcl.ac.uk/jobs/126345-...
Bioimage Analysis Specialist | King's College London
www.kcl.ac.uk
September 29, 2025 at 9:48 AM
BioImage analysis friends - King's are recruiting for a full-time, permanent facility position! Come and work with fun microscopes and fun people (and me!) - please share! www.kcl.ac.uk/jobs/126345-...
The provisional program for The 6th Crick Bioimage Analysis Symposium (#CBIAS2025) is live!
Join us at the @wellcomecollection.bsky.social in London in November for incredible talks, posters and insightful discussions.
Space is limited - register now!
www.crick.ac.uk/whats-on/cri...
Join us at the @wellcomecollection.bsky.social in London in November for incredible talks, posters and insightful discussions.
Space is limited - register now!
www.crick.ac.uk/whats-on/cri...
September 23, 2025 at 12:06 PM
The provisional program for The 6th Crick Bioimage Analysis Symposium (#CBIAS2025) is live!
Join us at the @wellcomecollection.bsky.social in London in November for incredible talks, posters and insightful discussions.
Space is limited - register now!
www.crick.ac.uk/whats-on/cri...
Join us at the @wellcomecollection.bsky.social in London in November for incredible talks, posters and insightful discussions.
Space is limited - register now!
www.crick.ac.uk/whats-on/cri...
Oh yes-the one and only Robert Haase @haesleinhuepf.bsky.social
From #GrandTheftAuto to the impact AI is having on #bioimaging.
+the challenges of creating AI courses for bioimage analysis, & his unique perspective as a programmer-turned-biologist.
Stream- bit.ly/microscopist...
@globias.bsky.social
From #GrandTheftAuto to the impact AI is having on #bioimaging.
+the challenges of creating AI courses for bioimage analysis, & his unique perspective as a programmer-turned-biologist.
Stream- bit.ly/microscopist...
@globias.bsky.social
The Microscopists | Robert Haase (Leipzig University)
We're thrilled to bring you the latest episode of The Microscopists, this time featuring Robert Haase, Lecturer and Training Coordinator at Leipzig University. In this episode, Robert chats about t...
bit.ly
September 19, 2025 at 11:15 AM
Oh yes-the one and only Robert Haase @haesleinhuepf.bsky.social
From #GrandTheftAuto to the impact AI is having on #bioimaging.
+the challenges of creating AI courses for bioimage analysis, & his unique perspective as a programmer-turned-biologist.
Stream- bit.ly/microscopist...
@globias.bsky.social
From #GrandTheftAuto to the impact AI is having on #bioimaging.
+the challenges of creating AI courses for bioimage analysis, & his unique perspective as a programmer-turned-biologist.
Stream- bit.ly/microscopist...
@globias.bsky.social
It’s crucial that the bioimage community joins spaces long dominated by computer vision/CS to highlight challenges in microscopy data and how we tackle them. Brilliant talk from @aafkegros.bsky.social showing how biology is both exciting and challenging👩🏻💻🔬🧬🦠 #bioimage #microscopy #interdisciplinary
I gave a talk at Blender Conference yesterday, showing how biological volumes work, and how to visualize them in Blender 😋 youtu.be/WPajSWX730o?... #bcon25
Microscopy Nodes: handling large biological volumes — Blender Conference 2025
YouTube video by Blender
youtu.be
September 19, 2025 at 8:00 AM
It’s crucial that the bioimage community joins spaces long dominated by computer vision/CS to highlight challenges in microscopy data and how we tackle them. Brilliant talk from @aafkegros.bsky.social showing how biology is both exciting and challenging👩🏻💻🔬🧬🦠 #bioimage #microscopy #interdisciplinary
Do you want to listen to me ramble about Pasteur's Image Analysis Hub (research.pasteur.fr/en/team/imag...)?
Let's meet online next Monday. I will present how we work, and what we have learned in delivering bioimage analysis support in the past 7 years.
Let's meet online next Monday. I will present how we work, and what we have learned in delivering bioimage analysis support in the past 7 years.
Next #GloBIAS seminar is coming up: join us on 22nd of September, 4 pm CEST to hear from Jean-Yves Tinevez about: The scientific added value of a core-facility dedicated to Bioimage Analysis services. Want to register? -> www.globias.org/activities/b...
September 18, 2025 at 9:26 AM
Do you want to listen to me ramble about Pasteur's Image Analysis Hub (research.pasteur.fr/en/team/imag...)?
Let's meet online next Monday. I will present how we work, and what we have learned in delivering bioimage analysis support in the past 7 years.
Let's meet online next Monday. I will present how we work, and what we have learned in delivering bioimage analysis support in the past 7 years.
Day 5️⃣ of our @embo.org course on "Advanced methods in bioimage analysis"! 🔬🖥️📊 @embl.org
@tischi.bsky.social is already launching 🚀 Lecture 4: Introduction to working with OME-Zarr (Tutorial) @openmicroscopy.org @zarr.dev
@tischi.bsky.social is already launching 🚀 Lecture 4: Introduction to working with OME-Zarr (Tutorial) @openmicroscopy.org @zarr.dev
September 18, 2025 at 7:23 AM
Day 5️⃣ of our @embo.org course on "Advanced methods in bioimage analysis"! 🔬🖥️📊 @embl.org
@tischi.bsky.social is already launching 🚀 Lecture 4: Introduction to working with OME-Zarr (Tutorial) @openmicroscopy.org @zarr.dev
@tischi.bsky.social is already launching 🚀 Lecture 4: Introduction to working with OME-Zarr (Tutorial) @openmicroscopy.org @zarr.dev
A new Perspective discusses the challenges of sharing annotated image datasets and offers advice for improving bioimage annotation and reuse, particularly for AI applications.
www.nature.com/articles/s41...
www.nature.com/articles/s41...
September 17, 2025 at 2:56 PM
A new Perspective discusses the challenges of sharing annotated image datasets and offers advice for improving bioimage annotation and reuse, particularly for AI applications.
www.nature.com/articles/s41...
www.nature.com/articles/s41...