#MRIcron
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revit.bsky.social
The raw data is just a bunch of 2d b&w images but I used MRIcron to convert them
May 24, 2025 at 6:57 PM
imagedistillary.com
If you just want to look at MRI scans side by side, not try to measure anything like volume/area, try these. If you use a Mac I suggest Osirix Lite (free).
www.osirix-viewer.com/osirix/osiri...
If you use a PC then MRIcron or Amide
www.nitrc.org/projects/mri...
amide.sourceforge.net
March 13, 2025 at 11:04 PM
scipastips.bsky.social
The original paper describing MRIcro, the first version of #MRIcron, has been cited more than 2000 times, according to CrossRef.

pubmed.ncbi.nlm.nih.gov/11568431/

doi.org/10.1155/2000...
Screenshot of the web site of this article, showing more than 2000 citations.
January 25, 2025 at 11:03 PM
scipastips.bsky.social
MRIcron, a powerful visualisation tool for neuroimaging research, has been written in #Object_Pascal with the #Lazarus_IDE to support platform-sensitive development and to provide a processor-native high-performance software system.

pubmed.ncbi.nlm.nih.gov/39761848/

doi.org/10.1016/j.ne...
Screenshot of the MRIcron user interface on macOS. The main menu provides access to core functions. Users can change the crosshair position by clicking on the image or setting the coordinates in the top toolbar, allowing users to specify the crosshair coordinates (with X, Y, Z referring to the column, row and slice of the image). The title bar reports the crosshair location in world space as well as the voxel intensity. Likewise, users can set contrast and brightness by dragging over the image or using the minimum and maximum thresholds in the titlebar. A pull-down menu allows the user to select the color scheme (here Grayscale). Buttons in the toolbar allow the user to display a gradient colorbar and draw lesions. The bottom status bar reports recent changes (here the new contrast values). Demo image. MRIcron introduced improved drawing tools to map lesions on individual participants (inset on right, sub-09) and create lesion incidence maps. The multicolored incidence map overlay shows the fractional incidence (thresholded for blue at 1% and red at 10%) for 1449 individuals. Both images from the Stroke Outcome Optimization Project (SOOP)
January 25, 2025 at 10:05 PM
twoodward.bsky.social
Hi fMRIers does anyone know where to download MRIcron readable images of this work? Shirer WR, Ryali S, Rykhlevskaia E, Menon V, Greicius MD. Decoding subject-driven cognitive states with whole-brain connectivity patterns. Cereb Cortex. 2012;22(1):158–165. 🙏
March 27, 2024 at 10:59 PM