Finally, this work provides inspiration and use cases for our machine learning tools in @galaxyproject.bsky.social
, which is part of #NCIITCR These tools simplify machine learning and promote best practices when using machine learning for cancer and other biomedical research. 8/ End 🧵
, which is part of #NCIITCR These tools simplify machine learning and promote best practices when using machine learning for cancer and other biomedical research. 8/ End 🧵
May 22, 2025 at 5:01 PM
Finally, this work provides inspiration and use cases for our machine learning tools in @galaxyproject.bsky.social
, which is part of #NCIITCR These tools simplify machine learning and promote best practices when using machine learning for cancer and other biomedical research. 8/ End 🧵
, which is part of #NCIITCR These tools simplify machine learning and promote best practices when using machine learning for cancer and other biomedical research. 8/ End 🧵
🚨 Cally Lin developed our well-loved #GSEA analysis on Xena, using tools from Avi Ma'ayan's lab! #nciitcr @theaacr.bsky.social
📍 Catch her poster at #AACR25
🗓️ Tues, April 29, 2–5 PM
📌 Section 46, Board 7
www.abstractsonline.com/pp8/#!/20273...
👤 Connect with Cally: www.linkedin.com/in/callylin
📍 Catch her poster at #AACR25
🗓️ Tues, April 29, 2–5 PM
📌 Section 46, Board 7
www.abstractsonline.com/pp8/#!/20273...
👤 Connect with Cally: www.linkedin.com/in/callylin
April 29, 2025 at 6:04 PM
🚨 Cally Lin developed our well-loved #GSEA analysis on Xena, using tools from Avi Ma'ayan's lab! #nciitcr @theaacr.bsky.social
📍 Catch her poster at #AACR25
🗓️ Tues, April 29, 2–5 PM
📌 Section 46, Board 7
www.abstractsonline.com/pp8/#!/20273...
👤 Connect with Cally: www.linkedin.com/in/callylin
📍 Catch her poster at #AACR25
🗓️ Tues, April 29, 2–5 PM
📌 Section 46, Board 7
www.abstractsonline.com/pp8/#!/20273...
👤 Connect with Cally: www.linkedin.com/in/callylin
First day at #AACR25! Our poster is now up at Section 46 Board 17. Drop on by! www.abstractsonline.com/pp8/#!/20273... #nciitcr @theaccr
April 27, 2025 at 6:43 PM
First day at #AACR25! Our poster is now up at Section 46 Board 17. Drop on by! www.abstractsonline.com/pp8/#!/20273... #nciitcr @theaccr
Excited to be at #AACR25! We have a poster on Sunday, April 27th 2pm - 5pm, Section 46 Board 17. Drop on by! www.abstractsonline.com/pp8/#!/20273... #nciitcr @theaacr.bsky.social
April 23, 2025 at 12:01 AM
Excited to be at #AACR25! We have a poster on Sunday, April 27th 2pm - 5pm, Section 46 Board 17. Drop on by! www.abstractsonline.com/pp8/#!/20273... #nciitcr @theaacr.bsky.social
The Genomics to Notebook (g2nb) environment is featured on the @galaxyproject.bsky.social blog. Read about how to use Galaxy, IGV, and other bioinformatics tools from within a @jupyter.org notebook interface!
galaxyproject.org/news/2025-04...
#nciitcr #bioinformatics
galaxyproject.org/news/2025-04...
#nciitcr #bioinformatics
Genomics to Notebook (g2nb): extending the computational notebook
An environment that integrates Jupyter with Galaxy, allowing tools to be added as notebook cells, and providing access to thousands of bioinformatics tools from within a notebook interface.
galaxyproject.org
April 14, 2025 at 6:18 PM
The Genomics to Notebook (g2nb) environment is featured on the @galaxyproject.bsky.social blog. Read about how to use Galaxy, IGV, and other bioinformatics tools from within a @jupyter.org notebook interface!
galaxyproject.org/news/2025-04...
#nciitcr #bioinformatics
galaxyproject.org/news/2025-04...
#nciitcr #bioinformatics
Thank you @jgoecks.bsky.social & @moffittnews.bsky.social for your collaboration to make Cancer Informatics Tools more accessible to researchers in your region. Check out what we covered here (www.itcrtraining.org/resources/blog) and stay tuned for more workshop opportunities coming soon! #NCIITCR
February 18, 2025 at 10:44 PM
Thank you @jgoecks.bsky.social & @moffittnews.bsky.social for your collaboration to make Cancer Informatics Tools more accessible to researchers in your region. Check out what we covered here (www.itcrtraining.org/resources/blog) and stay tuned for more workshop opportunities coming soon! #NCIITCR
#NCIITCR tools used at the workshop include
@galaxyproject.bsky.social, @bioconductor.bsky.social, spatialGE, and spatialTIME Thank you
@itcrtraining.bsky.social
@galaxyproject.bsky.social, @bioconductor.bsky.social, spatialGE, and spatialTIME Thank you
@itcrtraining.bsky.social
February 17, 2025 at 10:09 PM
#NCIITCR tools used at the workshop include
@galaxyproject.bsky.social, @bioconductor.bsky.social, spatialGE, and spatialTIME Thank you
@itcrtraining.bsky.social
@galaxyproject.bsky.social, @bioconductor.bsky.social, spatialGE, and spatialTIME Thank you
@itcrtraining.bsky.social
Great blog post describing the recent @itcrtraining.bsky.social cancer informatics workshop held at @moffittnews.bsky.social
This was a fantastic event with great attendance from the next generation of cancer data scientists! #NCIITCR
www.itcrtraining.org/resources/blog
This was a fantastic event with great attendance from the next generation of cancer data scientists! #NCIITCR
www.itcrtraining.org/resources/blog
ITN - Blog
What's ITN up to?
www.itcrtraining.org
February 17, 2025 at 10:09 PM
Great blog post describing the recent @itcrtraining.bsky.social cancer informatics workshop held at @moffittnews.bsky.social
This was a fantastic event with great attendance from the next generation of cancer data scientists! #NCIITCR
www.itcrtraining.org/resources/blog
This was a fantastic event with great attendance from the next generation of cancer data scientists! #NCIITCR
www.itcrtraining.org/resources/blog
Tangram is now available on GenePattern! 🎉 Map sc-RNA-seq data onto spatial gene expression data. GPU & CPU compatible for flexible workflows.
📷 GitHub: t.ly/07w-M
👉 CPU: t.ly/9G2lJ
👉GPU: t.ly/XO8qA
#nciitcr
@broadinstitute.org
📷 GitHub: t.ly/07w-M
👉 CPU: t.ly/9G2lJ
👉GPU: t.ly/XO8qA
#nciitcr
@broadinstitute.org
GitHub - broadinstitute/Tangram: Spatial alignment of single cell transcriptomic data.
Spatial alignment of single cell transcriptomic data. - GitHub - broadinstitute/Tangram: Spatial alignment of single cell transcriptomic data.
t.ly
December 12, 2024 at 8:39 PM
Tangram is now available on GenePattern! 🎉 Map sc-RNA-seq data onto spatial gene expression data. GPU & CPU compatible for flexible workflows.
📷 GitHub: t.ly/07w-M
👉 CPU: t.ly/9G2lJ
👉GPU: t.ly/XO8qA
#nciitcr
@broadinstitute.org
📷 GitHub: t.ly/07w-M
👉 CPU: t.ly/9G2lJ
👉GPU: t.ly/XO8qA
#nciitcr
@broadinstitute.org
Excited to talk for #NCIITCR about the role of team science in cancer research crackingthecancercode.buzzsprout.com/2219246/epis... @cansavvy.bsky.social
Team Science! - Cracking the Cancer Code
In this episode we discuss how modern cancer research increasingly requires collaboration between traditional lab scientists and computational experts from the earliest stages of study design. The epi...
crackingthecancercode.buzzsprout.com
December 2, 2024 at 7:01 PM
Excited to talk for #NCIITCR about the role of team science in cancer research crackingthecancercode.buzzsprout.com/2219246/epis... @cansavvy.bsky.social
Last day at #AACR24! Drop by our poster at Section 35 Board 1. www.abstractsonline.com/pp8/#!/20272... #nciitcr
April 10, 2024 at 1:32 PM
Last day at #AACR24! Drop by our poster at Section 35 Board 1. www.abstractsonline.com/pp8/#!/20272... #nciitcr
Dr. Bhat looked at the prognostic significance and immune infiltration patterns related to Claudin heterogeneity in pancreatic ductal adenocarcinoma patients www.abstractsonline.com/pp8/#!/20272... Find them tomorrow morning, April 10, Section 46 poster 4. @SidraMedicine #NCIITCR #AACR23
April 10, 2024 at 3:25 AM
Dr. Bhat looked at the prognostic significance and immune infiltration patterns related to Claudin heterogeneity in pancreatic ductal adenocarcinoma patients www.abstractsonline.com/pp8/#!/20272... Find them tomorrow morning, April 10, Section 46 poster 4. @SidraMedicine #NCIITCR #AACR23
Check it out! Shaykevich, Dr. Maitra, et al explored carbamazepine-mediated SMARCA4 inhibition as a therapeutic target for #ColorectalCancer. Poster is this afternoon Section 27 Poster 18. www.abstractsonline.com/pp8/#!/20272... #AACR24 @YUNews #NCIITCR
April 9, 2024 at 9:26 PM
Check it out! Shaykevich, Dr. Maitra, et al explored carbamazepine-mediated SMARCA4 inhibition as a therapeutic target for #ColorectalCancer. Poster is this afternoon Section 27 Poster 18. www.abstractsonline.com/pp8/#!/20272... #AACR24 @YUNews #NCIITCR
Check out research Xena enabled at #AACR24! Chayil Lattimore explored genomic differences in Black patients treated with chemoradiation for #HNSCC. Her poster is today 1:30-5:00p, Section 32 Poster 4. www.abstractsonline.com/pp8/#!/20272... #NCIITCR @CaretiaJay19 @UFHealthCenter @CaRE2HEC @UFCTSI
April 9, 2024 at 2:50 PM
Check out research Xena enabled at #AACR24! Chayil Lattimore explored genomic differences in Black patients treated with chemoradiation for #HNSCC. Her poster is today 1:30-5:00p, Section 32 Poster 4. www.abstractsonline.com/pp8/#!/20272... #NCIITCR @CaretiaJay19 @UFHealthCenter @CaRE2HEC @UFCTSI
Shaykevich, Dr. Maitra, et al researched intermediates of PRMT5/BRG1 as a combination therapy for #ColorectalCancer. Check it out this morning, April 8, at poster Section 13, Board 21. www.abstractsonline.com/pp8/#!/20272... #AACR23 @YUNews #NCIITCR
April 8, 2024 at 5:04 PM
Shaykevich, Dr. Maitra, et al researched intermediates of PRMT5/BRG1 as a combination therapy for #ColorectalCancer. Check it out this morning, April 8, at poster Section 13, Board 21. www.abstractsonline.com/pp8/#!/20272... #AACR23 @YUNews #NCIITCR
Check out @Erika__Curiel 's research at #AACR24 to identify a telomere-related gene signature for #PDAC. Find her this morning, April 9, Section 13 Poster 15. Xena helped enable this analysis! www.abstractsonline.com/pp8/#!/20272... #NCIITCR @Melendez_Zajgla @AACR @PCBIOLOGICAS @inmegen
April 8, 2024 at 3:00 PM
Check out @Erika__Curiel 's research at #AACR24 to identify a telomere-related gene signature for #PDAC. Find her this morning, April 9, Section 13 Poster 15. Xena helped enable this analysis! www.abstractsonline.com/pp8/#!/20272... #NCIITCR @Melendez_Zajgla @AACR @PCBIOLOGICAS @inmegen
Excited to be at #AACR24! We have a poster on Wednesday, April 10th 9am - 12pm, Section 35 Board 1. Drop on by! www.abstractsonline.com/pp8/#!/20272... #nciitcr
March 27, 2024 at 5:33 PM
Excited to be at #AACR24! We have a poster on Wednesday, April 10th 9am - 12pm, Section 35 Board 1. Drop on by! www.abstractsonline.com/pp8/#!/20272... #nciitcr