🔗 Snakemake for Bioinformatics – Playlist
👉 youtube.com/playlist?lis...
Been putting together a simple series on bioinformatics workflows using Bash & Snakemake. Fairly beginner-friendly.
Try it out.
#Snakemake #Bioinformatics #BashScripting #ReproducibleScience #BioinformaticsForBeginners
👉 youtube.com/playlist?lis...
Been putting together a simple series on bioinformatics workflows using Bash & Snakemake. Fairly beginner-friendly.
Try it out.
#Snakemake #Bioinformatics #BashScripting #ReproducibleScience #BioinformaticsForBeginners
Snakemake for Bioinformatics - YouTube
Here is a playlist to get you started with Snakemake for Bioinformatics. These are beginner-friendly tutorials regardless of whether you are just starting ou...
youtube.com
July 18, 2025 at 2:59 AM
🔗 Snakemake for Bioinformatics – Playlist
👉 youtube.com/playlist?lis...
Been putting together a simple series on bioinformatics workflows using Bash & Snakemake. Fairly beginner-friendly.
Try it out.
#Snakemake #Bioinformatics #BashScripting #ReproducibleScience #BioinformaticsForBeginners
👉 youtube.com/playlist?lis...
Been putting together a simple series on bioinformatics workflows using Bash & Snakemake. Fairly beginner-friendly.
Try it out.
#Snakemake #Bioinformatics #BashScripting #ReproducibleScience #BioinformaticsForBeginners
Trying to learn a bit more about #reproduciblescience #reproducibility with this @edXOnline course
Principles, Statistical and Computational Tools for Reproducible Data Science
edx.org/course/princip…
Principles, Statistical and Computational Tools for Reproducible Data Science
edx.org/course/princip…
HarvardX: Principles, Statistical and Computational Tools for Reproducible Data Science
Learn skills and tools that support data science and reproducible research, to ensure you can trust your own research results, reproduce them yourself, and communicate them to others.
www.edx.org
December 3, 2024 at 5:20 AM
Trying to learn a bit more about #reproduciblescience #reproducibility with this @edXOnline course
Principles, Statistical and Computational Tools for Reproducible Data Science
edx.org/course/princip…
Principles, Statistical and Computational Tools for Reproducible Data Science
edx.org/course/princip…
I love papers that are well written and link to the open datasets they use, so I can follow the methods and reproduce the figures. #reproduciblescience
August 9, 2025 at 10:36 PM
I love papers that are well written and link to the open datasets they use, so I can follow the methods and reproduce the figures. #reproduciblescience
Sharing this from @eLwazi:
Join Steven Lewis (Cold Spring Harbor Lab) for a seminar on using public DNA/RNA-seq data in cancer research and beyond.
🗓️ Wed, May 21 | 🕒 15:00 CAT |📍 Online
🔗 Register: zoom.us/meeting/regi...
#Genomics #CancerResearch #ReproducibleScience #eLwazi
Join Steven Lewis (Cold Spring Harbor Lab) for a seminar on using public DNA/RNA-seq data in cancer research and beyond.
🗓️ Wed, May 21 | 🕒 15:00 CAT |📍 Online
🔗 Register: zoom.us/meeting/regi...
#Genomics #CancerResearch #ReproducibleScience #eLwazi
Welcome! You are invited to join a meeting: eLwazi Reproducible Science Seminar Series. After registering, you will receive a confirmation email about joining the meeting.
The eLwazi ODSP Tools and Workflows Working Group will be hosting a hands-on series of seminars on Reproducible Science. Seminars will be scheduled for Wednesday.
zoom.us
May 20, 2025 at 5:59 PM
Sharing this from @eLwazi:
Join Steven Lewis (Cold Spring Harbor Lab) for a seminar on using public DNA/RNA-seq data in cancer research and beyond.
🗓️ Wed, May 21 | 🕒 15:00 CAT |📍 Online
🔗 Register: zoom.us/meeting/regi...
#Genomics #CancerResearch #ReproducibleScience #eLwazi
Join Steven Lewis (Cold Spring Harbor Lab) for a seminar on using public DNA/RNA-seq data in cancer research and beyond.
🗓️ Wed, May 21 | 🕒 15:00 CAT |📍 Online
🔗 Register: zoom.us/meeting/regi...
#Genomics #CancerResearch #ReproducibleScience #eLwazi
Many folks ask why I prefer @vscode.dev over #RStudio by @posit.co🤔?
This is why 👇
🪟 Multiple panels for different scripts
🧠 Parallel R sessions for multitasking
🔧 But honestly? It's the superior #git integration for me! 😎
#Rstats #ReproducibleScience
This is why 👇
🪟 Multiple panels for different scripts
🧠 Parallel R sessions for multitasking
🔧 But honestly? It's the superior #git integration for me! 😎
#Rstats #ReproducibleScience
May 22, 2025 at 9:35 AM
Many folks ask why I prefer @vscode.dev over #RStudio by @posit.co🤔?
This is why 👇
🪟 Multiple panels for different scripts
🧠 Parallel R sessions for multitasking
🔧 But honestly? It's the superior #git integration for me! 😎
#Rstats #ReproducibleScience
This is why 👇
🪟 Multiple panels for different scripts
🧠 Parallel R sessions for multitasking
🔧 But honestly? It's the superior #git integration for me! 😎
#Rstats #ReproducibleScience
💡 Embracing variation offers several benefits:
It improves transparency, enhances generalizability, reduces the risk of p-hacking, and allows for quantification of result stability.
This leads to more robust scientific findings 🦾. #ReproducibleScience
4/8
It improves transparency, enhances generalizability, reduces the risk of p-hacking, and allows for quantification of result stability.
This leads to more robust scientific findings 🦾. #ReproducibleScience
4/8
November 14, 2024 at 1:04 AM
💡 Embracing variation offers several benefits:
It improves transparency, enhances generalizability, reduces the risk of p-hacking, and allows for quantification of result stability.
This leads to more robust scientific findings 🦾. #ReproducibleScience
4/8
It improves transparency, enhances generalizability, reduces the risk of p-hacking, and allows for quantification of result stability.
This leads to more robust scientific findings 🦾. #ReproducibleScience
4/8
“Automated testing is a safety net that protects the program from its programmers.” 🐛 Yegor Bugayenko
The next time a scientist tells me they don’t have time to write tests, I’ll just point them to this quote.
#OpenScience #ReproducibleScience #DevTipsForScientists
The next time a scientist tells me they don’t have time to write tests, I’ll just point them to this quote.
#OpenScience #ReproducibleScience #DevTipsForScientists
July 25, 2025 at 10:54 PM
“Automated testing is a safety net that protects the program from its programmers.” 🐛 Yegor Bugayenko
The next time a scientist tells me they don’t have time to write tests, I’ll just point them to this quote.
#OpenScience #ReproducibleScience #DevTipsForScientists
The next time a scientist tells me they don’t have time to write tests, I’ll just point them to this quote.
#OpenScience #ReproducibleScience #DevTipsForScientists
Excellent talk by Prof @MarcusMunafo from @BristolUni at the #ReproducibleSciExe workshop @UniofExeter, organised by @JoanaFFPViana & @Thea_Vellame. Great points are being made! Which should be widely discussed. Some on next tweets. (continues) #openscience #ReproducibleScience
January 20, 2025 at 7:34 PM
Excellent talk by Prof @MarcusMunafo from @BristolUni at the #ReproducibleSciExe workshop @UniofExeter, organised by @JoanaFFPViana & @Thea_Vellame. Great points are being made! Which should be widely discussed. Some on next tweets. (continues) #openscience #ReproducibleScience
Don't miss out! Join this workshop on #reproduciblescience on March 25!
Deborah from our Engineering & Support Unit @MDC_Berlin will host a workshop on #image #prevalidation, where she will introduce the importance of ensuring that image data is suitable for the analysis it is intended for […]
Deborah from our Engineering & Support Unit @MDC_Berlin will host a workshop on #image #prevalidation, where she will introduce the importance of ensuring that image data is suitable for the analysis it is intended for […]
Original post on helmholtz.social
helmholtz.social
January 16, 2025 at 11:52 AM
Don't miss out! Join this workshop on #reproduciblescience on March 25!
Deborah from our Engineering & Support Unit @MDC_Berlin will host a workshop on #image #prevalidation, where she will introduce the importance of ensuring that image data is suitable for the analysis it is intended for […]
Deborah from our Engineering & Support Unit @MDC_Berlin will host a workshop on #image #prevalidation, where she will introduce the importance of ensuring that image data is suitable for the analysis it is intended for […]
Posting raw data and analysis #Rstats scripts to my university web repository https://plus.google.com/113040210411045341720/posts/HfbAvgrjQSC #reproduciblescience
New community features for Google Chat and an update on C...
Note: This blog post outlines upcoming changes to Google...
plus.google.com
December 6, 2024 at 1:19 AM
Posting raw data and analysis #Rstats scripts to my university web repository https://plus.google.com/113040210411045341720/posts/HfbAvgrjQSC #reproduciblescience
Learn about a neuroimaging research center’s transition to open and reproducible science@ReproNim @keith_a_bush #OpenScience #ReproducibleScience
osf.io/fe74t/
osf.io/fe74t/
OSF
osf.io
December 5, 2024 at 7:13 AM
Learn about a neuroimaging research center’s transition to open and reproducible science@ReproNim @keith_a_bush #OpenScience #ReproducibleScience
osf.io/fe74t/
osf.io/fe74t/
🚨 Last places available!
📅 May 27th to 30th, 2025 (ONLINE)
🔗 https://www.transmittingscience.com/courses/statistics-and-bioinformatics/functional-programming-with-r/
#TScourses #KeepLearning #RStats #FunctionalProgramming #DataScience #Bioinformatics #Tidyverse #ReproducibleScience
📅 May 27th to 30th, 2025 (ONLINE)
🔗 https://www.transmittingscience.com/courses/statistics-and-bioinformatics/functional-programming-with-r/
#TScourses #KeepLearning #RStats #FunctionalProgramming #DataScience #Bioinformatics #Tidyverse #ReproducibleScience
Functional programming with R
Transmitting Science ONLINE course FUNCTIONAL PROGRAMMING WITH R, by Dr. Verónica Cruz Alonso (Universidad Complutense de Madrid, Spain) & Dr. Julen Astigarraga (Universidad de Alcalá de Henares, Spain).
www.transmittingscience.com
May 20, 2025 at 12:02 PM
🚨 Last places available!
📅 May 27th to 30th, 2025 (ONLINE)
🔗 https://www.transmittingscience.com/courses/statistics-and-bioinformatics/functional-programming-with-r/
#TScourses #KeepLearning #RStats #FunctionalProgramming #DataScience #Bioinformatics #Tidyverse #ReproducibleScience
📅 May 27th to 30th, 2025 (ONLINE)
🔗 https://www.transmittingscience.com/courses/statistics-and-bioinformatics/functional-programming-with-r/
#TScourses #KeepLearning #RStats #FunctionalProgramming #DataScience #Bioinformatics #Tidyverse #ReproducibleScience
I’ve been using @rstudio for a long time locally, but have just installed RStudio server onto my Linux Workstation and my life has been changed forever. Reproducibility just got SO much easier!!! #NewPI #OpenSource #ReproducibleScience #Bioinformatics #NerdFeels
November 16, 2024 at 11:53 PM
I’ve been using @rstudio for a long time locally, but have just installed RStudio server onto my Linux Workstation and my life has been changed forever. Reproducibility just got SO much easier!!! #NewPI #OpenSource #ReproducibleScience #Bioinformatics #NerdFeels
I am totally biased but really enjoying @bgerstner90 talk on her Frugivoria database for the @EEBGradGroup Symposium!
Love #ReproducibleScience
Love #ReproducibleScience
November 18, 2024 at 3:47 AM
I am totally biased but really enjoying @bgerstner90 talk on her Frugivoria database for the @EEBGradGroup Symposium!
Love #ReproducibleScience
Love #ReproducibleScience
Making CO₂ useful starts with better science. This article by GETCO2 researchers calls for clear data, shared methods, and real-world testing to boost trust and progress in CO₂ conversion tech. Open data + smart tools = faster climate solutions. #CO2RR #CleanTech #ReproducibleScience
Enhancing data reproducibility and relevance for performance-mechanism studies in CO2 electrocatalysis
Yu Yang joined Dr. Fengwang Li’s group as a PhD candidate in 2021 at the University of Sydney. Her research focuses on catalyst and system design for …
www.sciencedirect.com
June 5, 2025 at 6:20 AM
Making CO₂ useful starts with better science. This article by GETCO2 researchers calls for clear data, shared methods, and real-world testing to boost trust and progress in CO₂ conversion tech. Open data + smart tools = faster climate solutions. #CO2RR #CleanTech #ReproducibleScience
I feel much more confident after Prof @MarcusMunafo's talk & Q&A. Completely agree w/ "Not all of our research should be high risk / high return science". Looking forward to seeing a progressive cultural change within the scientific community! #openscience #ReproducibleScience
January 20, 2025 at 7:35 PM
I feel much more confident after Prof @MarcusMunafo's talk & Q&A. Completely agree w/ "Not all of our research should be high risk / high return science". Looking forward to seeing a progressive cultural change within the scientific community! #openscience #ReproducibleScience
A final note on this thread: more quality measures (e.g. data / analysis sharing) = robust findings = move science more efficiently. #ReproducibleSciExe #openscience #ReproducibleScience
January 20, 2025 at 7:35 PM
A final note on this thread: more quality measures (e.g. data / analysis sharing) = robust findings = move science more efficiently. #ReproducibleSciExe #openscience #ReproducibleScience
So happy that I was able to play a small part in this really impressive study led by @elliotgould.bsky.social et al. on how the statistical analyses #ecologists choose affect the conclusions they come to.
bmcbiol.biomedcentral.com/articles/10....
#ReproducibleScience #Reproducibility #ecology #stats
bmcbiol.biomedcentral.com/articles/10....
#ReproducibleScience #Reproducibility #ecology #stats
February 10, 2025 at 1:28 PM
So happy that I was able to play a small part in this really impressive study led by @elliotgould.bsky.social et al. on how the statistical analyses #ecologists choose affect the conclusions they come to.
bmcbiol.biomedcentral.com/articles/10....
#ReproducibleScience #Reproducibility #ecology #stats
bmcbiol.biomedcentral.com/articles/10....
#ReproducibleScience #Reproducibility #ecology #stats
Had a great time delivering our Happy Git and GitHub 1-day course to researchers from @mncn-csic.bsky.social ! 🎉 We hope they’ll make the most of these tools to enhance reproducibility in their research. 🚀 #Git #GitHub #ReproducibleScience
March 7, 2025 at 12:30 PM
Had a great time delivering our Happy Git and GitHub 1-day course to researchers from @mncn-csic.bsky.social ! 🎉 We hope they’ll make the most of these tools to enhance reproducibility in their research. 🚀 #Git #GitHub #ReproducibleScience
Thanks @benbondlamberty.bsky.social for sharing kbroman's guide to getting started with reproducible research. A helpful resource for both ECRs interested in reproducibility and well-seasoned researchers looking to refine their practices
kbroman.org/steps2rr/
#OA #ReproducibleScience
kbroman.org/steps2rr/
#OA #ReproducibleScience
initial steps toward reproducible research
Suggestions of how to get started, in seeking to adopt a reproducible workflow for one's computational research.
kbroman.org
October 15, 2025 at 1:13 PM
Thanks @benbondlamberty.bsky.social for sharing kbroman's guide to getting started with reproducible research. A helpful resource for both ECRs interested in reproducibility and well-seasoned researchers looking to refine their practices
kbroman.org/steps2rr/
#OA #ReproducibleScience
kbroman.org/steps2rr/
#OA #ReproducibleScience
November 28, 2024 at 2:23 AM
That's what a hackathon looks like. @LHCbExperiment #analysispreservation #reproduciblescience
December 1, 2024 at 1:49 PM
That's what a hackathon looks like. @LHCbExperiment #analysispreservation #reproduciblescience
Brilliant overview of Registered Reports by Prof @chrisdc77 from @cardiffuni at #ReproducibleSciExe workshop @UniofExeter. #openscience #ReproducibleScience
January 20, 2025 at 7:35 PM
Brilliant overview of Registered Reports by Prof @chrisdc77 from @cardiffuni at #ReproducibleSciExe workshop @UniofExeter. #openscience #ReproducibleScience