Rauf Salamzade
@raufs.bsky.social
2.9K followers 2.7K following 63 posts
Interested in microbial ecology & evolution. Views are only my own. (he/him) 🎓: https://scholar.google.com/citations?hl=en&user=OBPpZq4AAAAJ&view_op=list_works&sortby=pubdate 👨‍💻: https://github.com/raufs
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Reposted by Rauf Salamzade
aphillippy.bsky.social
Last week we were in the Washington Post for our characterization of Robertsonian chromosomes. This week we are entering our 10th day of being shut down and all of our research is on hold. To help me feel not-so-bad, here is a thread of some studies we released right before the shutdown 🧵 [1/n]...
Reposted by Rauf Salamzade
stanford-med-id.bsky.social
After RFK Jr. accused the “woeful lack of nutrition education in medicine,” Stanford’s Dr. Jake Scott @jakescottmd.bsky.social argues doctors already know the basics, the real issue is systemic barriers keeping people from finding healthy food or care.

Read more here: tr.ee/jakescottnbc
Reposted by Rauf Salamzade
geiselbiofilm.bsky.social
New in JB: Morgan, Amemiya & Freddolino explore the role of DNA methylation on gene expression and chromatin structure in E. coli.
journals.asm.org/doi/10.1128/...
@asm.org #JBacteriology
Reposted by Rauf Salamzade
microbiomevif.bsky.social
SAVE THE DATE for #MVIF 42!

Pacific time and date in your time zone: www.timeanddate.com/worldclock/c...

Atlantic time and date in your time zone:
www.timeanddate.com/worldclock/c...
microbiomevif.bsky.social
NEW #MVIF program is out! 🤩

Free registration: cassyni.com/s/mvif-42

⭐️ Highlights:
🇦🇺 @gbouras13.bsky.social
🇺🇸 Danica Schmidtke

⭐️ Keynote:
🇺🇸 Peter Turnbaugh

⭐️ Talks:
🇸🇬 Minghao Chia
🇺🇸 @arzamasovalex.bsky.social
🇳🇿 Brooke Wilson
MVIF 42
Reposted by Rauf Salamzade
rachelmwheatley.bsky.social
Is a healthy microbiome one that is rich in phages? 🦠 Excited to share our paper out in Lancet Microbe with @bkoskella.bsky.social & @dholtappels.bsky.social where we test whether virome diversity can be used a broad signature of microbiome health 📈
lancetmicrobe.bsky.social
New research article

Evaluation of bacteriophages as a signature of #microbiome health: a systematic review and meta-analysis

www.thelancet.com/journals/lan...

#IDSky #ClinMicro #ViroSky #Phage #OpenAccess #OA
Reposted by Rauf Salamzade
Reposted by Rauf Salamzade
kacarlab.bsky.social
Out now! @elife.bsky.social
🔗 elifesciences.org/articles/105...

Nitrogenase is one of life's most essential enzymes.
We trace the evolution of over 5,000 extant & ancestral nitrogenase structures across billions of years.

Our full dataset is available for everyone to explore!
👉 nsdb.bact.wisc.edu
Reposted by Rauf Salamzade
rodai.bsky.social
Viral AlphaFold Database (VAD) is live in Science Advances

~27,000 predicted viral protein monomers & homodimers

Conserved folds across bacteria, archaea & eukaryotic viruses

New toxin–antitoxin system KreTA uncovered

Vast “functional darkness” remains uncharted

www.science.org/doi/10.1126/...
The Viral AlphaFold Database of monomers and homodimers reveals conserved protein folds in viruses of bacteria, archaea, and eukaryotes
VAD is a Viral AlphaFold Database of protein monomers and homodimers from viruses infecting hosts across the tree of life.
www.science.org
Reposted by Rauf Salamzade
microbiome.bsky.social
Thinking about a postdoc in microbiome science?
Our lab at the MPI for Biology (Tübingen) builds on the culture I established at Cornell: collaborative, creative, and internationally diverse. Postdocs lead their own projects with secure funding. Join us!
#PostdocJobs #HostMicrobe #AcademicJobs
Reposted by Rauf Salamzade
oliverio.bsky.social
Accepted version of our article "Half of microbial eukaryote literature focuses on only twelve human parasites" now out in ISMEJ!

Awesome effort led by undergrad Joanna Lepper and with @hbrappap.bsky.social.
Reposted by Rauf Salamzade
zeynepbaharoglu.bsky.social
Happy to share our new review in Royal Society Open Biology 🎉
tRNA-modifying enzymes in bacterial stress adaptation:
How tRNA mods rewire translation under oxidative + antibiotic stress (MoTTs, moonlighting, therapy angles).
Read: doi.org/10.1098/rsob...
#RNAsky #microsky #AMR #RNAmodifications
tRNA-modifying enzymes in bacterial stress adaptation | Open Biology
Transfer RNAs (tRNAs) and their modifications are central to bacterial translation and physiology, yet their roles in stress adaptation remain underexplored. While extensively studied in eukaryotes, a...
doi.org
Reposted by Rauf Salamzade
aaronwhiteley.bsky.social
Our work on the Panoptes antiphage system is published! Here we find that Panoptes "watches" the cytosol for phage immune evasion proteins–captured in this illustration by Clair Huffine of Insight Illustrations. A beautiful example of the effector triggered immunity paradigm.
Illustration depicting a bacterium under assault by phage. The bacterium “sees” phage immune evasion proteins and protects itself using a newly described antiphage system called Panoptes, named for the many-eyed mythical giant Argus Panoptes. Credit: Clair Huffine Insight Illustrations LLC
Reposted by Rauf Salamzade
Reposted by Rauf Salamzade
pbernalt6ss.bsky.social
Our paper, describing how the T6SSs of P. putida shape the tomato rhizosphere, is now in its final format in @isme-microbes.bsky.social ISME Communications. If you'd like to learn more, here is a thread (1/11) or read the Article doi.org/10.1093/isme....
Reposted by Rauf Salamzade
geiselbiofilm.bsky.social
Excited to be part of this collaboration with the Burrows lab exploring twitching and surface surface sensing by P. aeruginosa. This work further delineates a role for the T4P motor proteins and pili for surface sensing.
journals.asm.org/doi/10.1128/...
@asm.org