Will Fondrie
@willfondrie.com
1.4K followers
840 following
160 posts
Head of Data Science & Engineering at Talus Bio. I post about data science, BioML, AI drug discovery, Python, mass spec, proteomics, and silly things my kids do.
I also blog sometimes: https://willfondrie.com/post
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Will Fondrie
@willfondrie.com
· 10h
mzPeak: Designing a Scalable, Interoperable, and Future-Ready Mass Spectrometry Data Format
Advances in mass spectrometry (MS) instrumentation, including higher resolution, faster scan speeds, and improved sensitivity, have dramatically increased the data volume and complexity. The adoption of imaging and ion mobility further amplifies these challenges in proteomics, metabolomics, and lipidomics. Current open formats such as mzML and imzML struggle to keep pace due to large file sizes, slow data access, and limited metadata support. Vendor-specific formats offer faster access but lack interoperability and long-term archival guarantees. We here lay the groundwork for mzPeak, a next-generation community data format designed to address these challenges and support high-throughput, multidimensional MS workflows. By adopting a hybrid model that combines efficient binary storage for numerical data and both human- and machine-readable metadata storage, mzPeak will reduce file sizes, accelerate data access, and offer a scalable, adaptable solution for evolving MS technologies. For researchers, mzPeak will support complex workflows and regulatory compliance through faster access, improved metadata, and interoperability. For vendors, it offers a streamlined, open alternative to proprietary formats. mzPeak aims to become a cornerstone of MS data management, enabling sustainable, high-performance solutions for future data types and fostering collaboration across the mass spectrometry community.
pubs.acs.org
Reposted by Will Fondrie
Reposted by Will Fondrie
Reposted by Will Fondrie
Reposted by Will Fondrie
Reposted by Will Fondrie
Will Fondrie
@willfondrie.com
· Aug 8
Will Fondrie
@willfondrie.com
· Jul 19
Reposted by Will Fondrie
Lindsay K Pino
@lindsaykpino.com
· Jul 2
Talus Bio Technology Early Program Application
This is our exclusive sandbox for scientists who want to peer into the regulome before anyone else.
Participants have the option to send samples directly to the Talus Bio lab for regulome profiling o...
forms.gle
Will Fondrie
@willfondrie.com
· Jul 2
Lindsay K Pino
@lindsaykpino.com
· Jul 2
Native, Spatiotemporal Profiling of the Global Human Regulome
The regulome, comprising transcription factors, cofactors, chromatin remodelers, and other regulatory proteins, forms the core machinery by which cells interpret signals and execute gene expression pr...
www.biorxiv.org
Reposted by Will Fondrie
Lindsay K Pino
@lindsaykpino.com
· Jul 2
Native, Spatiotemporal Profiling of the Global Human Regulome
The regulome, comprising transcription factors, cofactors, chromatin remodelers, and other regulatory proteins, forms the core machinery by which cells interpret signals and execute gene expression pr...
www.biorxiv.org
Will Fondrie
@willfondrie.com
· Jun 28
Will Fondrie
@willfondrie.com
· Jun 10
Reposted by Will Fondrie
Reposted by Will Fondrie