Bioinformatics Advances
@bioinfoadv.bsky.social
A fully open access, peer-reviewed journal published jointly by Oxford University Press and the International Society for Computational Biology.
🍎 Just out in Bioinformatics Advances: "The Nutrition Toolbox permits in silico generation, analysis, and optimisation of personalised diets through metabolic modelling."
Full article available: https://doi.org/10.1093/bioadv/vbaf325
Authors include: @inesthiele.bsky.social
Full article available: https://doi.org/10.1093/bioadv/vbaf325
Authors include: @inesthiele.bsky.social
January 16, 2026 at 11:01 AM
🍎 Just out in Bioinformatics Advances: "The Nutrition Toolbox permits in silico generation, analysis, and optimisation of personalised diets through metabolic modelling."
Full article available: https://doi.org/10.1093/bioadv/vbaf325
Authors include: @inesthiele.bsky.social
Full article available: https://doi.org/10.1093/bioadv/vbaf325
Authors include: @inesthiele.bsky.social
🧬 Now published in Bioinformatics Advances: "Pipeasm: A tool for automated large chromosome-scale genome assembly and evaluation."
Explore the full study: https://doi.org/10.1093/bioadv/vbaf326
Explore the full study: https://doi.org/10.1093/bioadv/vbaf326
January 16, 2026 at 10:02 AM
🧬 Now published in Bioinformatics Advances: "Pipeasm: A tool for automated large chromosome-scale genome assembly and evaluation."
Explore the full study: https://doi.org/10.1093/bioadv/vbaf326
Explore the full study: https://doi.org/10.1093/bioadv/vbaf326
📊 Explore the latest from Bioinformatics Advances: "ggplotAgent: A self-debugging multi-modal agent for robust and reproducible scientific visualization."
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf332
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf332
January 15, 2026 at 11:01 AM
📊 Explore the latest from Bioinformatics Advances: "ggplotAgent: A self-debugging multi-modal agent for robust and reproducible scientific visualization."
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf332
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf332
⚡Now published in Bioinformatics Advances: "zelll: A fast, framework-free, and flexible implementation of the cell lists algorithm for the Rust programming language."
Full article available: https://doi.org/10.1093/bioadv/vbaf330
Full article available: https://doi.org/10.1093/bioadv/vbaf330
January 15, 2026 at 10:02 AM
⚡Now published in Bioinformatics Advances: "zelll: A fast, framework-free, and flexible implementation of the cell lists algorithm for the Rust programming language."
Full article available: https://doi.org/10.1093/bioadv/vbaf330
Full article available: https://doi.org/10.1093/bioadv/vbaf330
🧬 Just out in Bioinformatics Advances: "Machine learning can distinguish orphans that have resulted from sequence divergence beyond recognition."
Read the full paper here at https://doi.org/10.1093/bioadv/vbaf324
Read the full paper here at https://doi.org/10.1093/bioadv/vbaf324
January 14, 2026 at 11:02 AM
🧬 Just out in Bioinformatics Advances: "Machine learning can distinguish orphans that have resulted from sequence divergence beyond recognition."
Read the full paper here at https://doi.org/10.1093/bioadv/vbaf324
Read the full paper here at https://doi.org/10.1093/bioadv/vbaf324
🤖 Now published in Bioinformatics Advances: "REDAC: RNA-seq expression data analysis chatbot."
Explore the full study: https://doi.org/10.1093/bioadv/vbaf321
Authors include: @annecmg.bsky.social
Explore the full study: https://doi.org/10.1093/bioadv/vbaf321
Authors include: @annecmg.bsky.social
January 14, 2026 at 10:01 AM
🤖 Now published in Bioinformatics Advances: "REDAC: RNA-seq expression data analysis chatbot."
Explore the full study: https://doi.org/10.1093/bioadv/vbaf321
Authors include: @annecmg.bsky.social
Explore the full study: https://doi.org/10.1093/bioadv/vbaf321
Authors include: @annecmg.bsky.social
🔬 Explore the latest from Bioinformatics Advances: "Fluoro-forest: A random forest workflow for cell type annotation in high-dimensional immunofluorescence imaging with limited training data."
Full article available: https://doi.org/10.1093/bioadv/vbaf320
Authors include: @huyqdinh.bsky.social
Full article available: https://doi.org/10.1093/bioadv/vbaf320
Authors include: @huyqdinh.bsky.social
January 13, 2026 at 11:01 AM
🔬 Explore the latest from Bioinformatics Advances: "Fluoro-forest: A random forest workflow for cell type annotation in high-dimensional immunofluorescence imaging with limited training data."
Full article available: https://doi.org/10.1093/bioadv/vbaf320
Authors include: @huyqdinh.bsky.social
Full article available: https://doi.org/10.1093/bioadv/vbaf320
Authors include: @huyqdinh.bsky.social
🧬 Just out in Bioinformatics Advances: "Prompt-to-Pill: Multi-agent drug discovery and clinical simulation pipeline."
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf323
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf323
January 13, 2026 at 10:02 AM
🧬 Just out in Bioinformatics Advances: "Prompt-to-Pill: Multi-agent drug discovery and clinical simulation pipeline."
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf323
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf323
🏥 Now published in Bioinformatics Advances: "IHIT-BED: An interpretable transformer approach using unbiased hematology analyzer impedance data for early identification of bacteremia in emergency department."
Full article available: https://doi.org/10.1093/bioadv/vbaf322
Full article available: https://doi.org/10.1093/bioadv/vbaf322
January 12, 2026 at 11:01 AM
🏥 Now published in Bioinformatics Advances: "IHIT-BED: An interpretable transformer approach using unbiased hematology analyzer impedance data for early identification of bacteremia in emergency department."
Full article available: https://doi.org/10.1093/bioadv/vbaf322
Full article available: https://doi.org/10.1093/bioadv/vbaf322
🔬 Now published in Bioinformatics Advances: "Beyond synthetic lethality in large-scale metabolic and regulatory network models via genetic minimal intervention sets"
Find the full article here: https://doi.org/10.1093/bioadv/vbaf319
Find the full article here: https://doi.org/10.1093/bioadv/vbaf319
January 12, 2026 at 10:03 AM
🔬 Now published in Bioinformatics Advances: "Beyond synthetic lethality in large-scale metabolic and regulatory network models via genetic minimal intervention sets"
Find the full article here: https://doi.org/10.1093/bioadv/vbaf319
Find the full article here: https://doi.org/10.1093/bioadv/vbaf319
🌿 Just out in Bioinformatics Advances: "Computational identification of Azadirachta indica compounds targeting trypanothione reductase in Leishmania infantum"
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf318
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf318
January 9, 2026 at 11:01 AM
🌿 Just out in Bioinformatics Advances: "Computational identification of Azadirachta indica compounds targeting trypanothione reductase in Leishmania infantum"
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf318
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf318
📊 Now published in Bioinformatics Advances: "Perspectives in Computational Mass Spectrometry: Recent developments and key challenges”
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf301
Authors include: @lindsaykpino.com, @okohlbacher.bsky.social
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf301
Authors include: @lindsaykpino.com, @okohlbacher.bsky.social
January 9, 2026 at 10:02 AM
📊 Now published in Bioinformatics Advances: "Perspectives in Computational Mass Spectrometry: Recent developments and key challenges”
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf301
Authors include: @lindsaykpino.com, @okohlbacher.bsky.social
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf301
Authors include: @lindsaykpino.com, @okohlbacher.bsky.social
🔬 Now published in Bioinformatics Advances: “DCGAT-DTI: Dynamic Cross-Graph Attention Network for Drug-Target Interaction Prediction”.
Full article available at https://doi.org/10.1093/bioadv/vbaf306
Full article available at https://doi.org/10.1093/bioadv/vbaf306
January 8, 2026 at 2:18 PM
🔬 Now published in Bioinformatics Advances: “DCGAT-DTI: Dynamic Cross-Graph Attention Network for Drug-Target Interaction Prediction”.
Full article available at https://doi.org/10.1093/bioadv/vbaf306
Full article available at https://doi.org/10.1093/bioadv/vbaf306
🧪 Now published in Bioinformatics Advances: "SCOT+: A comprehensive software suite for single-cell alignment using optimal Transport"
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf314
Authors include: @pinard.bsky.social
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf314
Authors include: @pinard.bsky.social
January 8, 2026 at 10:01 AM
🧪 Now published in Bioinformatics Advances: "SCOT+: A comprehensive software suite for single-cell alignment using optimal Transport"
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf314
Authors include: @pinard.bsky.social
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf314
Authors include: @pinard.bsky.social
📊 Explore the latest from Bioinformatics Advances: “Data-based clustering in prediction of cervical cancer DNA methylation using pan-cancer genetic and clinical data.”
Find the full article at https://doi.org/10.1093/bioadv/vbaf316
Find the full article at https://doi.org/10.1093/bioadv/vbaf316
January 7, 2026 at 11:01 AM
📊 Explore the latest from Bioinformatics Advances: “Data-based clustering in prediction of cervical cancer DNA methylation using pan-cancer genetic and clinical data.”
Find the full article at https://doi.org/10.1093/bioadv/vbaf316
Find the full article at https://doi.org/10.1093/bioadv/vbaf316
🔢 Just out in Bioinformatics Advances: “genCRC32: Collision-free CRC32 based hashing of DNA sequences”
Full article available: https://doi.org/10.1093/bioadv/vbaf315
Full article available: https://doi.org/10.1093/bioadv/vbaf315
January 7, 2026 at 10:02 AM
🔢 Just out in Bioinformatics Advances: “genCRC32: Collision-free CRC32 based hashing of DNA sequences”
Full article available: https://doi.org/10.1093/bioadv/vbaf315
Full article available: https://doi.org/10.1093/bioadv/vbaf315
🧬 Explore the latest from Bioinformatics Advances: “Removing array-specific batch effects in GWAS mega-analyses by applying a two-step imputation workflow.”
Full article available at https://doi.org/10.1093/bioadv/vbaf317
Full article available at https://doi.org/10.1093/bioadv/vbaf317
January 6, 2026 at 11:01 AM
🧬 Explore the latest from Bioinformatics Advances: “Removing array-specific batch effects in GWAS mega-analyses by applying a two-step imputation workflow.”
Full article available at https://doi.org/10.1093/bioadv/vbaf317
Full article available at https://doi.org/10.1093/bioadv/vbaf317
📚 Now published in Bioinformatics Advances: “A new LUCApedia database for data-driven research on early evolutionary history”
Explore the full study: https://doi.org/10.1093/bioadv/vbaf309
Explore the full study: https://doi.org/10.1093/bioadv/vbaf309
January 6, 2026 at 10:02 AM
📚 Now published in Bioinformatics Advances: “A new LUCApedia database for data-driven research on early evolutionary history”
Explore the full study: https://doi.org/10.1093/bioadv/vbaf309
Explore the full study: https://doi.org/10.1093/bioadv/vbaf309
🌿 Explore the latest from Bioinformatics Advances: “Node2Vec-DGI-EL: A hierarchical graph representation learning model for ingredient-disease association prediction”
Explore the full study: https://doi.org/10.1093/bioadv/vbaf216
Explore the full study: https://doi.org/10.1093/bioadv/vbaf216
January 5, 2026 at 11:01 AM
🌿 Explore the latest from Bioinformatics Advances: “Node2Vec-DGI-EL: A hierarchical graph representation learning model for ingredient-disease association prediction”
Explore the full study: https://doi.org/10.1093/bioadv/vbaf216
Explore the full study: https://doi.org/10.1093/bioadv/vbaf216
📚Now published in Bioinformatics Advances: “Mapping educational needs in bioinformatics in Brazil: Adapting ISCB 3.0 Competencies to a regional context”
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf311
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf311
January 5, 2026 at 10:01 AM
📚Now published in Bioinformatics Advances: “Mapping educational needs in bioinformatics in Brazil: Adapting ISCB 3.0 Competencies to a regional context”
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf311
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf311
🧪 Just out in Bioinformatics Advances: “AmpWrap: A One-Line Fully Automated Amplicon Metabarcoding 16S and 18S rRNA Gene Analysis”
Explore the full study:
Explore the full study:
doi.org
December 30, 2025 at 10:01 AM
🧪 Just out in Bioinformatics Advances: “AmpWrap: A One-Line Fully Automated Amplicon Metabarcoding 16S and 18S rRNA Gene Analysis”
Explore the full study:
Explore the full study:
🌉 New from Bioinformatics Advances: “Bridging worlds: Connecting glycan representations with glycoinformatics via universal input and a canonicalized nomenclature.”
Full article available: https://doi.org/10.1093/bioadv/vbaf310
Authors include: @romanjoeres.bsky.social, @dbojar.bsky.social
Full article available: https://doi.org/10.1093/bioadv/vbaf310
Authors include: @romanjoeres.bsky.social, @dbojar.bsky.social
December 29, 2025 at 10:01 AM
🌉 New from Bioinformatics Advances: “Bridging worlds: Connecting glycan representations with glycoinformatics via universal input and a canonicalized nomenclature.”
Full article available: https://doi.org/10.1093/bioadv/vbaf310
Authors include: @romanjoeres.bsky.social, @dbojar.bsky.social
Full article available: https://doi.org/10.1093/bioadv/vbaf310
Authors include: @romanjoeres.bsky.social, @dbojar.bsky.social
💻 Now published in Bioinformatics Advances: “Prompt-based bioinformatic pipeline generation for a multi-step metaviral workflow.”
Explore the full study: https://doi.org/10.1093/bioadv/vbaf308
Authors include: @rocknmicrobe.bsky.social
Explore the full study: https://doi.org/10.1093/bioadv/vbaf308
Authors include: @rocknmicrobe.bsky.social
December 23, 2025 at 11:01 AM
💻 Now published in Bioinformatics Advances: “Prompt-based bioinformatic pipeline generation for a multi-step metaviral workflow.”
Explore the full study: https://doi.org/10.1093/bioadv/vbaf308
Authors include: @rocknmicrobe.bsky.social
Explore the full study: https://doi.org/10.1093/bioadv/vbaf308
Authors include: @rocknmicrobe.bsky.social
Season’s greetings from Bioinformatics Advances!
This has been a year of growth, with more than 600 submissions. We’re grateful to our editors, authors, and reviewers for their contributions and look forward to advancing computational biology together in 2026.
This has been a year of growth, with more than 600 submissions. We’re grateful to our editors, authors, and reviewers for their contributions and look forward to advancing computational biology together in 2026.
December 22, 2025 at 11:30 AM
Season’s greetings from Bioinformatics Advances!
This has been a year of growth, with more than 600 submissions. We’re grateful to our editors, authors, and reviewers for their contributions and look forward to advancing computational biology together in 2026.
This has been a year of growth, with more than 600 submissions. We’re grateful to our editors, authors, and reviewers for their contributions and look forward to advancing computational biology together in 2026.
🧬 Just out in Bioinformatics Advances: “Omics BioAnalytics: An RShiny application for multimodal biomarker panel discovery and assessment”
Full article available at https://doi.org/10.1093/bioadv/vbaf307
Full article available at https://doi.org/10.1093/bioadv/vbaf307
December 22, 2025 at 10:01 AM
🧬 Just out in Bioinformatics Advances: “Omics BioAnalytics: An RShiny application for multimodal biomarker panel discovery and assessment”
Full article available at https://doi.org/10.1093/bioadv/vbaf307
Full article available at https://doi.org/10.1093/bioadv/vbaf307