Bioinformatics Advances
@bioinfoadv.bsky.social
A fully open access, peer-reviewed journal published jointly by Oxford University Press and the International Society for Computational Biology.
🧠 Explore the latest from Bioinformatics Advances: “Multi-view deep learning of highly multiplexed imaging data improves association of cell states with clinical outcomes”.
Find the full study at https://doi.org/10.1093/bioadv/vbag010
Authors include: @kieranrcampbell.bsky.social
Find the full study at https://doi.org/10.1093/bioadv/vbag010
Authors include: @kieranrcampbell.bsky.social
January 23, 2026 at 10:01 AM
🧠 Explore the latest from Bioinformatics Advances: “Multi-view deep learning of highly multiplexed imaging data improves association of cell states with clinical outcomes”.
Find the full study at https://doi.org/10.1093/bioadv/vbag010
Authors include: @kieranrcampbell.bsky.social
Find the full study at https://doi.org/10.1093/bioadv/vbag010
Authors include: @kieranrcampbell.bsky.social
🧬 Just out in Bioinformatics Advances: "FRAME: Fast reference-based ancestry makeup estimation tool".
Full article available: https://doi.org/10.1093/bioadv/vbag006
Full article available: https://doi.org/10.1093/bioadv/vbag006
January 22, 2026 at 10:02 AM
🧬 Just out in Bioinformatics Advances: "FRAME: Fast reference-based ancestry makeup estimation tool".
Full article available: https://doi.org/10.1093/bioadv/vbag006
Full article available: https://doi.org/10.1093/bioadv/vbag006
🧬 Now published in Bioinformatics Advances: "CanDrivR-CS: A cancer-specific machine learning framework for distinguishing recurrent and rare variants".
Read the full paper here: https://doi.org/10.1093/bioadv/vbag008
Authors include: @tomrgaunt.bsky.social
Read the full paper here: https://doi.org/10.1093/bioadv/vbag008
Authors include: @tomrgaunt.bsky.social
January 21, 2026 at 10:02 AM
🧬 Now published in Bioinformatics Advances: "CanDrivR-CS: A cancer-specific machine learning framework for distinguishing recurrent and rare variants".
Read the full paper here: https://doi.org/10.1093/bioadv/vbag008
Authors include: @tomrgaunt.bsky.social
Read the full paper here: https://doi.org/10.1093/bioadv/vbag008
Authors include: @tomrgaunt.bsky.social
🔬 Explore the latest from Bioinformatics Advances: "VST-DAVis: An R Shiny application and web-browser for spatial transcriptomics data analysis and visualization"
Read the full paper here: https://doi.org/10.1093/bioadv/vbag007
Read the full paper here: https://doi.org/10.1093/bioadv/vbag007
January 20, 2026 at 11:02 AM
🔬 Explore the latest from Bioinformatics Advances: "VST-DAVis: An R Shiny application and web-browser for spatial transcriptomics data analysis and visualization"
Read the full paper here: https://doi.org/10.1093/bioadv/vbag007
Read the full paper here: https://doi.org/10.1093/bioadv/vbag007
🧬 Just out in Bioinformatics Advances: "ChromoMapper: A new tool to quickly compare large genome assemblies"
Full article available: https://doi.org/10.1093/bioadv/vbag005
Full article available: https://doi.org/10.1093/bioadv/vbag005
January 20, 2026 at 10:02 AM
🧬 Just out in Bioinformatics Advances: "ChromoMapper: A new tool to quickly compare large genome assemblies"
Full article available: https://doi.org/10.1093/bioadv/vbag005
Full article available: https://doi.org/10.1093/bioadv/vbag005
🦠 Now published in Bioinformatics Advances: "CoV-UniBind: A Unified Antibody Binding Database for SARS-CoV-2"
Find the full paper here: https://doi.org/10.1093/bioadv/vbaf328
Find the full paper here: https://doi.org/10.1093/bioadv/vbaf328
January 19, 2026 at 11:01 AM
🦠 Now published in Bioinformatics Advances: "CoV-UniBind: A Unified Antibody Binding Database for SARS-CoV-2"
Find the full paper here: https://doi.org/10.1093/bioadv/vbaf328
Find the full paper here: https://doi.org/10.1093/bioadv/vbaf328
🧪 Explore the latest from Bioinformatics Advances: "EC-Bench: A benchmark for Enzyme Commission number prediction."
Read the full paper here: https://doi.org/10.1093/bioadv/vbag004
Read the full paper here: https://doi.org/10.1093/bioadv/vbag004
January 19, 2026 at 10:02 AM
🧪 Explore the latest from Bioinformatics Advances: "EC-Bench: A benchmark for Enzyme Commission number prediction."
Read the full paper here: https://doi.org/10.1093/bioadv/vbag004
Read the full paper here: https://doi.org/10.1093/bioadv/vbag004
🍎 Just out in Bioinformatics Advances: "The Nutrition Toolbox permits in silico generation, analysis, and optimisation of personalised diets through metabolic modelling."
Full article available: https://doi.org/10.1093/bioadv/vbaf325
Authors include: @inesthiele.bsky.social
Full article available: https://doi.org/10.1093/bioadv/vbaf325
Authors include: @inesthiele.bsky.social
January 16, 2026 at 11:01 AM
🍎 Just out in Bioinformatics Advances: "The Nutrition Toolbox permits in silico generation, analysis, and optimisation of personalised diets through metabolic modelling."
Full article available: https://doi.org/10.1093/bioadv/vbaf325
Authors include: @inesthiele.bsky.social
Full article available: https://doi.org/10.1093/bioadv/vbaf325
Authors include: @inesthiele.bsky.social
🧬 Now published in Bioinformatics Advances: "Pipeasm: A tool for automated large chromosome-scale genome assembly and evaluation."
Explore the full study: https://doi.org/10.1093/bioadv/vbaf326
Explore the full study: https://doi.org/10.1093/bioadv/vbaf326
January 16, 2026 at 10:02 AM
🧬 Now published in Bioinformatics Advances: "Pipeasm: A tool for automated large chromosome-scale genome assembly and evaluation."
Explore the full study: https://doi.org/10.1093/bioadv/vbaf326
Explore the full study: https://doi.org/10.1093/bioadv/vbaf326
📊 Explore the latest from Bioinformatics Advances: "ggplotAgent: A self-debugging multi-modal agent for robust and reproducible scientific visualization."
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf332
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf332
January 15, 2026 at 11:01 AM
📊 Explore the latest from Bioinformatics Advances: "ggplotAgent: A self-debugging multi-modal agent for robust and reproducible scientific visualization."
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf332
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf332
⚡Now published in Bioinformatics Advances: "zelll: A fast, framework-free, and flexible implementation of the cell lists algorithm for the Rust programming language."
Full article available: https://doi.org/10.1093/bioadv/vbaf330
Full article available: https://doi.org/10.1093/bioadv/vbaf330
January 15, 2026 at 10:02 AM
⚡Now published in Bioinformatics Advances: "zelll: A fast, framework-free, and flexible implementation of the cell lists algorithm for the Rust programming language."
Full article available: https://doi.org/10.1093/bioadv/vbaf330
Full article available: https://doi.org/10.1093/bioadv/vbaf330
🧬 Just out in Bioinformatics Advances: "Machine learning can distinguish orphans that have resulted from sequence divergence beyond recognition."
Read the full paper here at https://doi.org/10.1093/bioadv/vbaf324
Read the full paper here at https://doi.org/10.1093/bioadv/vbaf324
January 14, 2026 at 11:02 AM
🧬 Just out in Bioinformatics Advances: "Machine learning can distinguish orphans that have resulted from sequence divergence beyond recognition."
Read the full paper here at https://doi.org/10.1093/bioadv/vbaf324
Read the full paper here at https://doi.org/10.1093/bioadv/vbaf324
🤖 Now published in Bioinformatics Advances: "REDAC: RNA-seq expression data analysis chatbot."
Explore the full study: https://doi.org/10.1093/bioadv/vbaf321
Authors include: @annecmg.bsky.social
Explore the full study: https://doi.org/10.1093/bioadv/vbaf321
Authors include: @annecmg.bsky.social
January 14, 2026 at 10:01 AM
🤖 Now published in Bioinformatics Advances: "REDAC: RNA-seq expression data analysis chatbot."
Explore the full study: https://doi.org/10.1093/bioadv/vbaf321
Authors include: @annecmg.bsky.social
Explore the full study: https://doi.org/10.1093/bioadv/vbaf321
Authors include: @annecmg.bsky.social
🔬 Explore the latest from Bioinformatics Advances: "Fluoro-forest: A random forest workflow for cell type annotation in high-dimensional immunofluorescence imaging with limited training data."
Full article available: https://doi.org/10.1093/bioadv/vbaf320
Authors include: @huyqdinh.bsky.social
Full article available: https://doi.org/10.1093/bioadv/vbaf320
Authors include: @huyqdinh.bsky.social
January 13, 2026 at 11:01 AM
🔬 Explore the latest from Bioinformatics Advances: "Fluoro-forest: A random forest workflow for cell type annotation in high-dimensional immunofluorescence imaging with limited training data."
Full article available: https://doi.org/10.1093/bioadv/vbaf320
Authors include: @huyqdinh.bsky.social
Full article available: https://doi.org/10.1093/bioadv/vbaf320
Authors include: @huyqdinh.bsky.social
🧬 Just out in Bioinformatics Advances: "Prompt-to-Pill: Multi-agent drug discovery and clinical simulation pipeline."
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf323
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf323
January 13, 2026 at 10:02 AM
🧬 Just out in Bioinformatics Advances: "Prompt-to-Pill: Multi-agent drug discovery and clinical simulation pipeline."
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf323
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf323
🏥 Now published in Bioinformatics Advances: "IHIT-BED: An interpretable transformer approach using unbiased hematology analyzer impedance data for early identification of bacteremia in emergency department."
Full article available: https://doi.org/10.1093/bioadv/vbaf322
Full article available: https://doi.org/10.1093/bioadv/vbaf322
January 12, 2026 at 11:01 AM
🏥 Now published in Bioinformatics Advances: "IHIT-BED: An interpretable transformer approach using unbiased hematology analyzer impedance data for early identification of bacteremia in emergency department."
Full article available: https://doi.org/10.1093/bioadv/vbaf322
Full article available: https://doi.org/10.1093/bioadv/vbaf322
🔬 Now published in Bioinformatics Advances: "Beyond synthetic lethality in large-scale metabolic and regulatory network models via genetic minimal intervention sets"
Find the full article here: https://doi.org/10.1093/bioadv/vbaf319
Find the full article here: https://doi.org/10.1093/bioadv/vbaf319
January 12, 2026 at 10:03 AM
🔬 Now published in Bioinformatics Advances: "Beyond synthetic lethality in large-scale metabolic and regulatory network models via genetic minimal intervention sets"
Find the full article here: https://doi.org/10.1093/bioadv/vbaf319
Find the full article here: https://doi.org/10.1093/bioadv/vbaf319
🌿 Just out in Bioinformatics Advances: "Computational identification of Azadirachta indica compounds targeting trypanothione reductase in Leishmania infantum"
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf318
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf318
January 9, 2026 at 11:01 AM
🌿 Just out in Bioinformatics Advances: "Computational identification of Azadirachta indica compounds targeting trypanothione reductase in Leishmania infantum"
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf318
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf318
📊 Now published in Bioinformatics Advances: "Perspectives in Computational Mass Spectrometry: Recent developments and key challenges”
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf301
Authors include: @lindsaykpino.com, @okohlbacher.bsky.social
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf301
Authors include: @lindsaykpino.com, @okohlbacher.bsky.social
January 9, 2026 at 10:02 AM
📊 Now published in Bioinformatics Advances: "Perspectives in Computational Mass Spectrometry: Recent developments and key challenges”
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf301
Authors include: @lindsaykpino.com, @okohlbacher.bsky.social
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf301
Authors include: @lindsaykpino.com, @okohlbacher.bsky.social
🔬 Now published in Bioinformatics Advances: “DCGAT-DTI: Dynamic Cross-Graph Attention Network for Drug-Target Interaction Prediction”.
Full article available at https://doi.org/10.1093/bioadv/vbaf306
Full article available at https://doi.org/10.1093/bioadv/vbaf306
January 8, 2026 at 2:18 PM
🔬 Now published in Bioinformatics Advances: “DCGAT-DTI: Dynamic Cross-Graph Attention Network for Drug-Target Interaction Prediction”.
Full article available at https://doi.org/10.1093/bioadv/vbaf306
Full article available at https://doi.org/10.1093/bioadv/vbaf306
🧪 Now published in Bioinformatics Advances: "SCOT+: A comprehensive software suite for single-cell alignment using optimal Transport"
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf314
Authors include: @pinard.bsky.social
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf314
Authors include: @pinard.bsky.social
January 8, 2026 at 10:01 AM
🧪 Now published in Bioinformatics Advances: "SCOT+: A comprehensive software suite for single-cell alignment using optimal Transport"
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf314
Authors include: @pinard.bsky.social
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf314
Authors include: @pinard.bsky.social
📊 Explore the latest from Bioinformatics Advances: “Data-based clustering in prediction of cervical cancer DNA methylation using pan-cancer genetic and clinical data.”
Find the full article at https://doi.org/10.1093/bioadv/vbaf316
Find the full article at https://doi.org/10.1093/bioadv/vbaf316
January 7, 2026 at 11:01 AM
📊 Explore the latest from Bioinformatics Advances: “Data-based clustering in prediction of cervical cancer DNA methylation using pan-cancer genetic and clinical data.”
Find the full article at https://doi.org/10.1093/bioadv/vbaf316
Find the full article at https://doi.org/10.1093/bioadv/vbaf316
🔢 Just out in Bioinformatics Advances: “genCRC32: Collision-free CRC32 based hashing of DNA sequences”
Full article available: https://doi.org/10.1093/bioadv/vbaf315
Full article available: https://doi.org/10.1093/bioadv/vbaf315
January 7, 2026 at 10:02 AM
🔢 Just out in Bioinformatics Advances: “genCRC32: Collision-free CRC32 based hashing of DNA sequences”
Full article available: https://doi.org/10.1093/bioadv/vbaf315
Full article available: https://doi.org/10.1093/bioadv/vbaf315
🧬 Explore the latest from Bioinformatics Advances: “Removing array-specific batch effects in GWAS mega-analyses by applying a two-step imputation workflow.”
Full article available at https://doi.org/10.1093/bioadv/vbaf317
Full article available at https://doi.org/10.1093/bioadv/vbaf317
January 6, 2026 at 11:01 AM
🧬 Explore the latest from Bioinformatics Advances: “Removing array-specific batch effects in GWAS mega-analyses by applying a two-step imputation workflow.”
Full article available at https://doi.org/10.1093/bioadv/vbaf317
Full article available at https://doi.org/10.1093/bioadv/vbaf317
📚 Now published in Bioinformatics Advances: “A new LUCApedia database for data-driven research on early evolutionary history”
Explore the full study: https://doi.org/10.1093/bioadv/vbaf309
Explore the full study: https://doi.org/10.1093/bioadv/vbaf309
January 6, 2026 at 10:02 AM
📚 Now published in Bioinformatics Advances: “A new LUCApedia database for data-driven research on early evolutionary history”
Explore the full study: https://doi.org/10.1093/bioadv/vbaf309
Explore the full study: https://doi.org/10.1093/bioadv/vbaf309