Bush Lab
@bushlab.bsky.social
100 followers
77 following
23 posts
The Bush Lab is a research group at the University of Washington in Seattle. We advance mass spectrometry for biophysics and structural biology. https://biophysicalms.org/
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Bush Lab
@bushlab.bsky.social
· 14h
Will Fondrie
@willfondrie.com
· 14h
mzPeak: Designing a Scalable, Interoperable, and Future-Ready Mass Spectrometry Data Format
Advances in mass spectrometry (MS) instrumentation, including higher resolution, faster scan speeds, and improved sensitivity, have dramatically increased the data volume and complexity. The adoption of imaging and ion mobility further amplifies these challenges in proteomics, metabolomics, and lipidomics. Current open formats such as mzML and imzML struggle to keep pace due to large file sizes, slow data access, and limited metadata support. Vendor-specific formats offer faster access but lack interoperability and long-term archival guarantees. We here lay the groundwork for mzPeak, a next-generation community data format designed to address these challenges and support high-throughput, multidimensional MS workflows. By adopting a hybrid model that combines efficient binary storage for numerical data and both human- and machine-readable metadata storage, mzPeak will reduce file sizes, accelerate data access, and offer a scalable, adaptable solution for evolving MS technologies. For researchers, mzPeak will support complex workflows and regulatory compliance through faster access, improved metadata, and interoperability. For vendors, it offers a streamlined, open alternative to proprietary formats. mzPeak aims to become a cornerstone of MS data management, enabling sustainable, high-performance solutions for future data types and fostering collaboration across the mass spectrometry community.
pubs.acs.org
Bush Lab
@bushlab.bsky.social
· 14d
Bush Lab
@bushlab.bsky.social
· Aug 11
Bush Lab
@bushlab.bsky.social
· Aug 11
Bush Lab
@bushlab.bsky.social
· Aug 11
Bush Lab
@bushlab.bsky.social
· Aug 11
Bush Lab
@bushlab.bsky.social
· Aug 5
Bush Lab
@bushlab.bsky.social
· Aug 5
Bush Lab
@bushlab.bsky.social
· Aug 5
Reposted by Bush Lab
John Tuthill
@tuthill.bsky.social
· Jul 14
Fear and loathing on study section: Reviewing grant proposals while the system is burning
As grants are canceled, delayed and subject to general uncertainty, participating in study sections can feel futile. But it’s more important than ever.
www.thetransmitter.org
Reposted by Bush Lab
Reposted by Bush Lab
Bush Lab
@bushlab.bsky.social
· Apr 9
Bush Lab
@bushlab.bsky.social
· Mar 7
Bush Lab
@bushlab.bsky.social
· Mar 3
Bush Lab
@bushlab.bsky.social
· Feb 24
Bush Lab
@bushlab.bsky.social
· Feb 20
Reposted by Bush Lab
Jonathan Lambert
@jonlambert.bsky.social
· Feb 18