Chenxin Li, PhD
@chenxinli2.bsky.social
Or just “Li” |
Assist. Prof. @ Plant Bio Michigan State U. |
Also post data visualization |
Lab: https://cxli233.github.io/cxLi_lab/ |
GitHub: https://github.com/cxli233
Assist. Prof. @ Plant Bio Michigan State U. |
Also post data visualization |
Lab: https://cxli233.github.io/cxLi_lab/ |
GitHub: https://github.com/cxli233
Pinned
Chenxin Li, PhD
@chenxinli2.bsky.social
· Nov 12
Here is a thread showcasing my GitHub repositories: 1) Friends Don't Let Friends Make Bad Graphs. An opinionated essay on good and bad graphs.
My popular one by a long shot with 6.4k stars and 248 forks. github.com/cxli233/Frie...
My popular one by a long shot with 6.4k stars and 248 forks. github.com/cxli233/Frie...
Reposted by Chenxin Li, PhD
But it actually looks more like the Coeloplana willeyi, or even marbled meat 🥩✨️
February 12, 2026 at 12:04 PM
But it actually looks more like the Coeloplana willeyi, or even marbled meat 🥩✨️
Reposted by Chenxin Li, PhD
Reposted by Chenxin Li, PhD
Big news from our lab: we can now stably edit the genome of a parasitic plant! Transgene-free, genome-edited P. japonicum in one generation! This will transform how we study #parasiticplants and other hard-to-transform plants.
www.biorxiv.org/content/10.6...
www.biorxiv.org/content/10.6...
February 12, 2026 at 9:24 AM
Big news from our lab: we can now stably edit the genome of a parasitic plant! Transgene-free, genome-edited P. japonicum in one generation! This will transform how we study #parasiticplants and other hard-to-transform plants.
www.biorxiv.org/content/10.6...
www.biorxiv.org/content/10.6...
This is embarrassing at so many levels.
Bondi crashes out over Epstein: "The Dow is over 50,000 dollars! I don't know why you're laughing. You're a great stock trader as I hear, Raskin. The Dow is over 50,000 right now. The S&P at almost 7,000, and the Nasdaq smashing records. That's what we should be talking about."
February 12, 2026 at 1:15 AM
This is embarrassing at so many levels.
Reposted by Chenxin Li, PhD
Our paper is out in MBE! doi.org/10.1093/molb...
We tracked TF binding site evolution across 589 grass species, and found that while binding preferences are pretty stable over 80 million years of evolution, individual binding sites have turned over a lot.
Thread here: bsky.app/profile/char...
We tracked TF binding site evolution across 589 grass species, and found that while binding preferences are pretty stable over 80 million years of evolution, individual binding sites have turned over a lot.
Thread here: bsky.app/profile/char...
December 16, 2025 at 8:45 PM
Our paper is out in MBE! doi.org/10.1093/molb...
We tracked TF binding site evolution across 589 grass species, and found that while binding preferences are pretty stable over 80 million years of evolution, individual binding sites have turned over a lot.
Thread here: bsky.app/profile/char...
We tracked TF binding site evolution across 589 grass species, and found that while binding preferences are pretty stable over 80 million years of evolution, individual binding sites have turned over a lot.
Thread here: bsky.app/profile/char...
Reposted by Chenxin Li, PhD
UK wheat faces a serious new threat: yellow rust has overcome Yr15 resistance in major varieties. A BBSRC /DEFRA Rapid Response led by JIC with Niab and RRes as partners is hunting new resistance genes to protect harvests. 🌾 www.niab.com/news-views/n...
February 11, 2026 at 2:01 PM
UK wheat faces a serious new threat: yellow rust has overcome Yr15 resistance in major varieties. A BBSRC /DEFRA Rapid Response led by JIC with Niab and RRes as partners is hunting new resistance genes to protect harvests. 🌾 www.niab.com/news-views/n...
Reposted by Chenxin Li, PhD
New collaborative preprint out in which we use @10xgenomics.bsky.social Xenium to do some (a lot!) of plant spatial transcriptomics, led by Jim Whelan's team: "Mitochondrial Retrograde Signaling in Arabidopsis thaliana: heterogenous, spatial and polarised aspects" www.biorxiv.org/content/10.6...
www.biorxiv.org
February 11, 2026 at 5:22 AM
New collaborative preprint out in which we use @10xgenomics.bsky.social Xenium to do some (a lot!) of plant spatial transcriptomics, led by Jim Whelan's team: "Mitochondrial Retrograde Signaling in Arabidopsis thaliana: heterogenous, spatial and polarised aspects" www.biorxiv.org/content/10.6...
This is why I can’t stand LinkedIn.
February 11, 2026 at 9:07 PM
This is why I can’t stand LinkedIn.
Reposted by Chenxin Li, PhD
Long in the making, but happy to present the Chlamydomonas chlororibosome!
Cryo-ET🔬reveals a large new domain on the small subunit, built from multiple extensions in conserved ribosomal proteins.
bioRxiv 📖: shorturl.at/q44tG
This suggests greater chlororibosome diversity than expected!
1/n 🧵
Cryo-ET🔬reveals a large new domain on the small subunit, built from multiple extensions in conserved ribosomal proteins.
bioRxiv 📖: shorturl.at/q44tG
This suggests greater chlororibosome diversity than expected!
1/n 🧵
February 10, 2026 at 8:35 AM
Long in the making, but happy to present the Chlamydomonas chlororibosome!
Cryo-ET🔬reveals a large new domain on the small subunit, built from multiple extensions in conserved ribosomal proteins.
bioRxiv 📖: shorturl.at/q44tG
This suggests greater chlororibosome diversity than expected!
1/n 🧵
Cryo-ET🔬reveals a large new domain on the small subunit, built from multiple extensions in conserved ribosomal proteins.
bioRxiv 📖: shorturl.at/q44tG
This suggests greater chlororibosome diversity than expected!
1/n 🧵
Reposted by Chenxin Li, PhD
Job opportunities...
Newly launched Quantitative Biology Initiative in the Department of Biology at the University of Maryland, College Park seeks applications for three collaborative postdoctoral fellowships. Best consideration date 3/14.
Full Details:
umd.wd1.myworkdayjobs.com/en-US/UMCP/j...
Newly launched Quantitative Biology Initiative in the Department of Biology at the University of Maryland, College Park seeks applications for three collaborative postdoctoral fellowships. Best consideration date 3/14.
Full Details:
umd.wd1.myworkdayjobs.com/en-US/UMCP/j...
February 11, 2026 at 8:13 PM
Job opportunities...
Newly launched Quantitative Biology Initiative in the Department of Biology at the University of Maryland, College Park seeks applications for three collaborative postdoctoral fellowships. Best consideration date 3/14.
Full Details:
umd.wd1.myworkdayjobs.com/en-US/UMCP/j...
Newly launched Quantitative Biology Initiative in the Department of Biology at the University of Maryland, College Park seeks applications for three collaborative postdoctoral fellowships. Best consideration date 3/14.
Full Details:
umd.wd1.myworkdayjobs.com/en-US/UMCP/j...
Reposted by Chenxin Li, PhD
🚨 Positions available in Plant Science! Please share. We’re hiring:
1. Postdoc
2.PhD (UK applicants only)
Focus: root oxygen dynamics, developmental signalling. Come help us uncover how O2 shapes root development.
More info here-
sites.google.com/view/root-re...
#plantscijobs #plantscience
1. Postdoc
2.PhD (UK applicants only)
Focus: root oxygen dynamics, developmental signalling. Come help us uncover how O2 shapes root development.
More info here-
sites.google.com/view/root-re...
#plantscijobs #plantscience
February 11, 2026 at 3:18 PM
🚨 Positions available in Plant Science! Please share. We’re hiring:
1. Postdoc
2.PhD (UK applicants only)
Focus: root oxygen dynamics, developmental signalling. Come help us uncover how O2 shapes root development.
More info here-
sites.google.com/view/root-re...
#plantscijobs #plantscience
1. Postdoc
2.PhD (UK applicants only)
Focus: root oxygen dynamics, developmental signalling. Come help us uncover how O2 shapes root development.
More info here-
sites.google.com/view/root-re...
#plantscijobs #plantscience
Study section that was Feb got pushed back to April. I wonder what's that about...
February 11, 2026 at 6:52 PM
Study section that was Feb got pushed back to April. I wonder what's that about...
Reposted by Chenxin Li, PhD
Ima go Mountain Bluebird for the #blue theme of #birdoftheday picked by @robcrank68.bsky.social
He knows he's pretty! He's like the blue version of that particular shade of fuchsia that makes your camera sensor freak out 😂
#birds #becurious 🪶
He knows he's pretty! He's like the blue version of that particular shade of fuchsia that makes your camera sensor freak out 😂
#birds #becurious 🪶
February 11, 2026 at 3:21 PM
Ima go Mountain Bluebird for the #blue theme of #birdoftheday picked by @robcrank68.bsky.social
He knows he's pretty! He's like the blue version of that particular shade of fuchsia that makes your camera sensor freak out 😂
#birds #becurious 🪶
He knows he's pretty! He's like the blue version of that particular shade of fuchsia that makes your camera sensor freak out 😂
#birds #becurious 🪶
Cute babies glowing babies
February 11, 2026 at 5:30 PM
Cute babies glowing babies
Reposted by Chenxin Li, PhD
Government-issued Real IDs and driver’s licenses aren’t proof of citizenship, and most people aren’t walking around with a passport.
Markwayne Mullin defends "show me your papers": "If you're here legally, there's nothing to hide. Most people already are walking around with a government-issued ID, meaning your Real ID or your driver's license. If you go board a train here, you gotta show your ID."
February 11, 2026 at 12:59 PM
Government-issued Real IDs and driver’s licenses aren’t proof of citizenship, and most people aren’t walking around with a passport.
Reposted by Chenxin Li, PhD
My good friend and director of the natural history museum of Denmark is looking for a curator for #bryophytes. Thus, if you like these small #plants, you should really apply. Great place to work, great city and amazing plants.
#sciencejobs #plantscijobs
www.linkedin.com/posts/nina-r...
#sciencejobs #plantscijobs
www.linkedin.com/posts/nina-r...
We are hiring a Tenure-track Assistant Professor and Curator in Bryology at the National Natural History Museum Denmark, in central Copenhagen.
Duties are collection-based research, curation of a… ...
We are hiring a Tenure-track Assistant Professor and Curator in Bryology at the National Natural History Museum Denmark, in central Copenhagen.
Duties are collection-based research, curation of a h...
www.linkedin.com
February 11, 2026 at 8:59 AM
My good friend and director of the natural history museum of Denmark is looking for a curator for #bryophytes. Thus, if you like these small #plants, you should really apply. Great place to work, great city and amazing plants.
#sciencejobs #plantscijobs
www.linkedin.com/posts/nina-r...
#sciencejobs #plantscijobs
www.linkedin.com/posts/nina-r...
Reposted by Chenxin Li, PhD
My lab at the JIC is recruiting 3 PDRA:
🔹 Bioinformatics / AI
🔹 Molecular Biology / Genetics
🔹 Proteomics
Programme funded by the Novo Nordisk Foundation.
📅 Closing date: 27 February
Apply via JIC website:
www.jic.ac.uk/vacancies/
Please share with outstanding candidates. 🙏
🔹 Bioinformatics / AI
🔹 Molecular Biology / Genetics
🔹 Proteomics
Programme funded by the Novo Nordisk Foundation.
📅 Closing date: 27 February
Apply via JIC website:
www.jic.ac.uk/vacancies/
Please share with outstanding candidates. 🙏
Postdoctoral Researcher (Charpentier Group) | John Innes Centre
An exciting opportunity has arisen for a Postdoctoral Researcher to join the Charpentier Group at the John Innes Centre, working on cutting-edge science in the field of plant calcium signalling.
www.jic.ac.uk
February 11, 2026 at 8:46 AM
My lab at the JIC is recruiting 3 PDRA:
🔹 Bioinformatics / AI
🔹 Molecular Biology / Genetics
🔹 Proteomics
Programme funded by the Novo Nordisk Foundation.
📅 Closing date: 27 February
Apply via JIC website:
www.jic.ac.uk/vacancies/
Please share with outstanding candidates. 🙏
🔹 Bioinformatics / AI
🔹 Molecular Biology / Genetics
🔹 Proteomics
Programme funded by the Novo Nordisk Foundation.
📅 Closing date: 27 February
Apply via JIC website:
www.jic.ac.uk/vacancies/
Please share with outstanding candidates. 🙏
Reposted by Chenxin Li, PhD
BABYBOOM-like expression in the cowpea egg and central cellenables parthenogenesis, endosperm development, and viable haploid seed formation https://www.biorxiv.org/content/10.64898/2026.02.08.704694v1
February 10, 2026 at 11:01 PM
BABYBOOM-like expression in the cowpea egg and central cellenables parthenogenesis, endosperm development, and viable haploid seed formation https://www.biorxiv.org/content/10.64898/2026.02.08.704694v1
Reposted by Chenxin Li, PhD
New preprint! The same TFs can drive distinct regulatory programs depending on where they bind.
TSS → rapid stress responses
Intronic & upstream → cell-type programs
Enhancer-like CRMs → embryo/meristem programs
Coding-sequence binding → repression
www.biorxiv.org/content/10.6...
TSS → rapid stress responses
Intronic & upstream → cell-type programs
Enhancer-like CRMs → embryo/meristem programs
Coding-sequence binding → repression
www.biorxiv.org/content/10.6...
February 10, 2026 at 9:50 PM
New preprint! The same TFs can drive distinct regulatory programs depending on where they bind.
TSS → rapid stress responses
Intronic & upstream → cell-type programs
Enhancer-like CRMs → embryo/meristem programs
Coding-sequence binding → repression
www.biorxiv.org/content/10.6...
TSS → rapid stress responses
Intronic & upstream → cell-type programs
Enhancer-like CRMs → embryo/meristem programs
Coding-sequence binding → repression
www.biorxiv.org/content/10.6...
Reposted by Chenxin Li, PhD
I honestly think that's too nice to them. I think a lot of them truly hate modernity and genuinely intentionally want to make life worse for the majority of people
February 11, 2026 at 12:37 AM
I honestly think that's too nice to them. I think a lot of them truly hate modernity and genuinely intentionally want to make life worse for the majority of people
Reposted by Chenxin Li, PhD
Listen to this. Not a penny more for this. Abolish and prosecute anyone who had anything to do with it.
"A modern-day concentration camp ... People have been killed by the staff here." Irish citizen Seamus Culleton has been in ICE detention since September, despite having a valid work permit and his own business in the US.
February 10, 2026 at 3:41 PM
Listen to this. Not a penny more for this. Abolish and prosecute anyone who had anything to do with it.
Reposted by Chenxin Li, PhD
Noncanonical loops regulated by EMF1 and cohesin-associated factors shape the distinct 3D genome architecture in plants https://www.biorxiv.org/content/10.64898/2026.02.08.704707v1
February 9, 2026 at 10:01 PM
Noncanonical loops regulated by EMF1 and cohesin-associated factors shape the distinct 3D genome architecture in plants https://www.biorxiv.org/content/10.64898/2026.02.08.704707v1
Reposted by Chenxin Li, PhD
bonus : adding the inhibitor molecule increases the colored sectors
February 10, 2026 at 11:58 AM
bonus : adding the inhibitor molecule increases the colored sectors
Reposted by Chenxin Li, PhD
Have you ever wondered why some petal are bicolor ? Like in dahlias or petunia ?
(Part of) the answer is in this publication :
doi.org/10.1093/pcp/...
(Part of) the answer is in this publication :
doi.org/10.1093/pcp/...
February 10, 2026 at 11:58 AM
Have you ever wondered why some petal are bicolor ? Like in dahlias or petunia ?
(Part of) the answer is in this publication :
doi.org/10.1093/pcp/...
(Part of) the answer is in this publication :
doi.org/10.1093/pcp/...
Reposted by Chenxin Li, PhD
In our latest preprint we report the unexpected discovery of Epi-STR, an R-stereoselective ortholog of the S-selective canonical Strictosidine synthases (STRs). Found in the rather obscure plant Pogonopus specious. This work was led by my stellar student Clara Morweiser!
#natprod
#PlantScience
#natprod
#PlantScience
February 10, 2026 at 12:07 PM
In our latest preprint we report the unexpected discovery of Epi-STR, an R-stereoselective ortholog of the S-selective canonical Strictosidine synthases (STRs). Found in the rather obscure plant Pogonopus specious. This work was led by my stellar student Clara Morweiser!
#natprod
#PlantScience
#natprod
#PlantScience