Dogancan Ozturan
@dogancan.org
postdoc @carldeboer.bsky.social working on gene regulation
podcast: @nobelcast.com
podcast: @nobelcast.com
Pinned
I built a specialized reader for researchers to keep up with the literature. It aggregates papers from 3200+ journals into a clean, unified feed.
Let me know what you think!
uncited.org
Let me know what you think!
uncited.org
Reposted by Dogancan Ozturan
🚨We are recruiting two PhD students 🚨
1) Quantitative & dynamic analysis of limb-regenerative signaling centers w/ @osvaldo-chara.bsky.social 📶🧮💻
🔗https://www.phd.tuebingen.mpg.de/80704/Quantitative-and-dynamic-analysis-of-limb-regenerative-signaling-center-interactions
1) Quantitative & dynamic analysis of limb-regenerative signaling centers w/ @osvaldo-chara.bsky.social 📶🧮💻
🔗https://www.phd.tuebingen.mpg.de/80704/Quantitative-and-dynamic-analysis-of-limb-regenerative-signaling-center-interactions
December 17, 2025 at 7:53 AM
🚨We are recruiting two PhD students 🚨
1) Quantitative & dynamic analysis of limb-regenerative signaling centers w/ @osvaldo-chara.bsky.social 📶🧮💻
🔗https://www.phd.tuebingen.mpg.de/80704/Quantitative-and-dynamic-analysis-of-limb-regenerative-signaling-center-interactions
1) Quantitative & dynamic analysis of limb-regenerative signaling centers w/ @osvaldo-chara.bsky.social 📶🧮💻
🔗https://www.phd.tuebingen.mpg.de/80704/Quantitative-and-dynamic-analysis-of-limb-regenerative-signaling-center-interactions
Reposted by Dogancan Ozturan
I wrote a guide on constructive peer review. This is a polished version of an internal guide I had for my group. Of course, constructive feedback is welcome, peers!
deboer.bme.ubc.ca/2025/12/09/g...
deboer.bme.ubc.ca/2025/12/09/g...
December 9, 2025 at 6:38 PM
I wrote a guide on constructive peer review. This is a polished version of an internal guide I had for my group. Of course, constructive feedback is welcome, peers!
deboer.bme.ubc.ca/2025/12/09/g...
deboer.bme.ubc.ca/2025/12/09/g...
Reposted by Dogancan Ozturan
👋@sbmeubc.bsky.social and @bccancerfdn.bsky.social are seeking a successful candidate for the Dr. Connie Eaves Chair in Cancer Stem Cell Research (Professor or Associate Professor with tenure). Please apply if you have innovative engineering solutions and technologies!
www.nature.com/naturecareer...
www.nature.com/naturecareer...
Associate Professor (tenure) or Professor (tenure) Dr. Connie Eaves Chair, Cancer Stem Cell Research - Vancouver, British Columbia (CA) job with School of Biomedical Engineering, UBC | 12849033
Invite applications for a full-time faculty position at the rank of Associate Professor or Professor with tenure in Cancer Stem Cell Research at UBC.
www.nature.com
December 16, 2025 at 11:29 PM
👋@sbmeubc.bsky.social and @bccancerfdn.bsky.social are seeking a successful candidate for the Dr. Connie Eaves Chair in Cancer Stem Cell Research (Professor or Associate Professor with tenure). Please apply if you have innovative engineering solutions and technologies!
www.nature.com/naturecareer...
www.nature.com/naturecareer...
Reposted by Dogancan Ozturan
We are hiring a PhD intern for Summer 2026 in ML for regulatory genomics at ReLU/BRAID/Genentech! Work on DNA sequence models for the noncoding genome (e.g. DNA design, models of MPRA and genetic variants)! 🥳
2026 Summer Intern - Biology Research | AI Development in South San Francisco, California, United States of America | Students & Graduates at Genentech
Apply for 2026 Summer Intern - Biology Research | AI Development job with Genentech in South San Francisco, California, United States of America. Students & Graduates at Genentech
lnkd.in
December 10, 2025 at 10:10 PM
We are hiring a PhD intern for Summer 2026 in ML for regulatory genomics at ReLU/BRAID/Genentech! Work on DNA sequence models for the noncoding genome (e.g. DNA design, models of MPRA and genetic variants)! 🥳
I built a specialized reader for researchers to keep up with the literature. It aggregates papers from 3200+ journals into a clean, unified feed.
Let me know what you think!
uncited.org
Let me know what you think!
uncited.org
December 10, 2025 at 1:27 AM
I built a specialized reader for researchers to keep up with the literature. It aggregates papers from 3200+ journals into a clean, unified feed.
Let me know what you think!
uncited.org
Let me know what you think!
uncited.org
Reposted by Dogancan Ozturan
“We fundamentally believe that publishing less – but better – is essential for the health of the entire research system worldwide,” the authors of the report state.
Less is more: academic publishing needs ‘radical change,’ Cambridge press report concludes
Academic publishing needs “renewed focus and collective action” to embrace new approaches and ensure the future of the industry, concludes a report from Cambridge University Press, released last we…
retractionwatch.com
October 21, 2025 at 7:11 PM
“We fundamentally believe that publishing less – but better – is essential for the health of the entire research system worldwide,” the authors of the report state.
Reposted by Dogancan Ozturan
Reposted by Dogancan Ozturan
1/ Why are eukaryotic gene regulatory networks (GRNs) so much more complex than prokaryotic ones?
In our new preprint, we investigated the role that recombination – a key step in eukaryotic reproductive strategies – plays in this problem! www.biorxiv.org/content/10.1...
In our new preprint, we investigated the role that recombination – a key step in eukaryotic reproductive strategies – plays in this problem! www.biorxiv.org/content/10.1...
Evolutionary simulations reveal role for genomic recombination in the evolution of gene regulatory network complexity and robustness
The gene regulatory networks (GRNs) of eukaryotes are dramatically more complex than the GRNs of prokaryotes, but we lack a complete picture of the selective pressures that have shaped this difference...
www.biorxiv.org
September 3, 2025 at 7:25 PM
1/ Why are eukaryotic gene regulatory networks (GRNs) so much more complex than prokaryotic ones?
In our new preprint, we investigated the role that recombination – a key step in eukaryotic reproductive strategies – plays in this problem! www.biorxiv.org/content/10.1...
In our new preprint, we investigated the role that recombination – a key step in eukaryotic reproductive strategies – plays in this problem! www.biorxiv.org/content/10.1...
Reposted by Dogancan Ozturan
Passionate about single-cell method development? 🔬 Join our lab as a Postdoctoral Fellow at @UBC and help uncover androgen receptor enhancer mechanisms in prostate cancer.
ubc.wd10.myworkdayjobs.com/en-US/ubcfac...
ubc.wd10.myworkdayjobs.com/en-US/ubcfac...
ayjobs.com
rb.gy
August 19, 2025 at 1:32 PM
Passionate about single-cell method development? 🔬 Join our lab as a Postdoctoral Fellow at @UBC and help uncover androgen receptor enhancer mechanisms in prostate cancer.
ubc.wd10.myworkdayjobs.com/en-US/ubcfac...
ubc.wd10.myworkdayjobs.com/en-US/ubcfac...
Reposted by Dogancan Ozturan
To all post-docs: The Genome Biology dept @embl.org
has an Independent faculty position. Fantastic place to set up your lab –great package: core funding, fantastic Ph.D. students, cutting edge core facilities & great colleagues. Closing date Sept 19th
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
has an Independent faculty position. Fantastic place to set up your lab –great package: core funding, fantastic Ph.D. students, cutting edge core facilities & great colleagues. Closing date Sept 19th
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
Group Leader - Genome Biology Unit
Are you ready to lead groundbreaking research in Genome Biology? Join us at EMBL! We are seeking a motivated scientist to lead an independent research group addressing exciting and original biological...
embl.wd103.myworkdayjobs.com
July 30, 2025 at 1:41 PM
To all post-docs: The Genome Biology dept @embl.org
has an Independent faculty position. Fantastic place to set up your lab –great package: core funding, fantastic Ph.D. students, cutting edge core facilities & great colleagues. Closing date Sept 19th
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
has an Independent faculty position. Fantastic place to set up your lab –great package: core funding, fantastic Ph.D. students, cutting edge core facilities & great colleagues. Closing date Sept 19th
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
Reposted by Dogancan Ozturan
SOOOO MANY GENOMICS MODELSSSS! 😱 Often unclear which is best since they benchmark differently! In this preprint, we introduce GAME, a new framework that utilizes APIs to enable sustainable, uniform model evaluation so we can see which is actually best for each task. doi.org/10.1101/2025...
July 11, 2025 at 7:34 AM
SOOOO MANY GENOMICS MODELSSSS! 😱 Often unclear which is best since they benchmark differently! In this preprint, we introduce GAME, a new framework that utilizes APIs to enable sustainable, uniform model evaluation so we can see which is actually best for each task. doi.org/10.1101/2025...
Reposted by Dogancan Ozturan
Free in-person registration is open for #MLCB2025! Sept 10-11 at @nygenome.org and online at youtube.com/@mlcbconf. Paper/abstract deadline is June 1, more deets including our fantastic invited speaker lineup at mlcb.org! Please RP.
Machine Learning in Computational Biology
Youtube channel for the Machine Learning in Computational Biology conference: https://mlcb.github.io/
youtube.com
May 15, 2025 at 12:24 AM
Free in-person registration is open for #MLCB2025! Sept 10-11 at @nygenome.org and online at youtube.com/@mlcbconf. Paper/abstract deadline is June 1, more deets including our fantastic invited speaker lineup at mlcb.org! Please RP.
Reposted by Dogancan Ozturan
Sevgili gençler, hazırlanın, büyük bir yolculuğa çıkıyoruz.
May 9, 2025 at 4:46 PM
Sevgili gençler, hazırlanın, büyük bir yolculuğa çıkıyoruz.
Reposted by Dogancan Ozturan
⏰Abstract deadline for the Cascadia Advanced Genomic Technologies Meeting is April 30!⚠️ We're hoping this will be the first of many, catalyzing collaboration and leveraging our regional strength in advanced genomics technologies! See you there!
de-boer-lab.github.io/CAGT_meeting/
de-boer-lab.github.io/CAGT_meeting/
April 28, 2025 at 6:05 PM
⏰Abstract deadline for the Cascadia Advanced Genomic Technologies Meeting is April 30!⚠️ We're hoping this will be the first of many, catalyzing collaboration and leveraging our regional strength in advanced genomics technologies! See you there!
de-boer-lab.github.io/CAGT_meeting/
de-boer-lab.github.io/CAGT_meeting/
Clone bunch of gRNAs in one go! 🚀
Multiplexed CRISPR-Cas9 is driving next-gen functional genomics: think gene regulation, base editing, and combinatorial screens. However, efficiently delivering many gRNAs simultaneously into cells remains tricky. One elegant solution? gRNA arrays... (1/11)
April 11, 2025 at 10:14 PM
Clone bunch of gRNAs in one go! 🚀
Reposted by Dogancan Ozturan
Multiplexed CRISPR-Cas9 is driving next-gen functional genomics: think gene regulation, base editing, and combinatorial screens. However, efficiently delivering many gRNAs simultaneously into cells remains tricky. One elegant solution? gRNA arrays... (1/11)
April 11, 2025 at 8:16 PM
Multiplexed CRISPR-Cas9 is driving next-gen functional genomics: think gene regulation, base editing, and combinatorial screens. However, efficiently delivering many gRNAs simultaneously into cells remains tricky. One elegant solution? gRNA arrays... (1/11)
Reposted by Dogancan Ozturan
Latest preprint from the lab describing a super fast way to clone arrays of CRISPR guide RNAs. If you want to target multiple sites simultaneously, and want fast iteration on building and testing arrays of guides, look no further!
Bonus: it's named after a Pokemon🔥🦄
Bonus: it's named after a Pokemon🔥🦄
Multiplexed CRISPR-Cas9 is driving next-gen functional genomics: think gene regulation, base editing, and combinatorial screens. However, efficiently delivering many gRNAs simultaneously into cells remains tricky. One elegant solution? gRNA arrays... (1/11)
April 11, 2025 at 8:25 PM
Latest preprint from the lab describing a super fast way to clone arrays of CRISPR guide RNAs. If you want to target multiple sites simultaneously, and want fast iteration on building and testing arrays of guides, look no further!
Bonus: it's named after a Pokemon🔥🦄
Bonus: it's named after a Pokemon🔥🦄
Reposted by Dogancan Ozturan
Reposted by Dogancan Ozturan
Join us June 19-20, 2025 in Vancouver BC for the Cascadia Advanced Genomic Technologies meeting! Featuring Keynote speaker Calin Plesa @calin.bsky.social Abstract deadline April 30🔔, but registration is capped so don't wait! 😱
de-boer-lab.github.io/CAGT_meeting/
de-boer-lab.github.io/CAGT_meeting/
CAGT: Cascadia Advanced Genomic Technologies
June 19-20 2025, Vancouver, BC, Canada
de-boer-lab.github.io
March 26, 2025 at 4:47 PM
Join us June 19-20, 2025 in Vancouver BC for the Cascadia Advanced Genomic Technologies meeting! Featuring Keynote speaker Calin Plesa @calin.bsky.social Abstract deadline April 30🔔, but registration is capped so don't wait! 😱
de-boer-lab.github.io/CAGT_meeting/
de-boer-lab.github.io/CAGT_meeting/
Reposted by Dogancan Ozturan
0/ Essential reading for anyone training or using sequence-function models trained on genomic sequences! 🚨 In our new preprint, we explore the ways homology within genomes can cause leakage when training sequence-based models and ways to prevent it
January 27, 2025 at 11:04 PM
0/ Essential reading for anyone training or using sequence-function models trained on genomic sequences! 🚨 In our new preprint, we explore the ways homology within genomes can cause leakage when training sequence-based models and ways to prevent it
Reposted by Dogancan Ozturan
Beware! AAV libraries prone to length & homology dependent chimerism! Our latest preprint, from the brilliant @jblalanne.bsky.social, was a true surprise as related phenomena are textbook for lentivirus (highly relevant to HIV & Perturb-seq) yet to our reading not known for AAV tinyurl.com/5amc562a
January 17, 2025 at 6:17 PM
Beware! AAV libraries prone to length & homology dependent chimerism! Our latest preprint, from the brilliant @jblalanne.bsky.social, was a true surprise as related phenomena are textbook for lentivirus (highly relevant to HIV & Perturb-seq) yet to our reading not known for AAV tinyurl.com/5amc562a
Reposted by Dogancan Ozturan
🎉 Excited to announce job openings in our new lab @mpi-bio-fml.bsky.social in Tübingen!🇩🇪Looking for enthusiastic colleagues to explore regeneration together! We have positions for:
🔬 Research Technician
💻 Bioinformatician
🎓 PhD Studentship
🧪🔬📖 Postdocs
Details and links below👇
🔬 Research Technician
💻 Bioinformatician
🎓 PhD Studentship
🧪🔬📖 Postdocs
Details and links below👇
December 20, 2024 at 8:33 AM
🎉 Excited to announce job openings in our new lab @mpi-bio-fml.bsky.social in Tübingen!🇩🇪Looking for enthusiastic colleagues to explore regeneration together! We have positions for:
🔬 Research Technician
💻 Bioinformatician
🎓 PhD Studentship
🧪🔬📖 Postdocs
Details and links below👇
🔬 Research Technician
💻 Bioinformatician
🎓 PhD Studentship
🧪🔬📖 Postdocs
Details and links below👇