Erik Bekkers
@erikjbekkers.bsky.social
780 followers 390 following 1 posts
AMLab, Informatics Institute, University of Amsterdam. ELLIS Scholar. Geometry-Grounded Representation Learning. Equivariant Deep Learning.
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Reposted by Erik Bekkers
sukjulian.bsky.social
Enschede crowd you don't want to miss this! Join us for two exciting talks by Jolanda Wentzel and @erikjbekkers.bsky.social. As a bonus, you get to see me in "appropriate traditional dress from [my] country of origin".

📅 28 May
📍 UTwente campus
Reposted by Erik Bekkers
Reposted by Erik Bekkers
olgatticus.bsky.social
Super happy to share our work was accepted as an Oral at the Delta Workshop @ ICLR 2025! 🎉

Can’t wait to talk about it in Singapore 😎

Congrats to the amazing team @eijkelboomfloor.bsky.social @alisometry.bsky.social @erikjbekkers.bsky.social 🔥
olgatticus.bsky.social
Variational Flow Matching goes Riemannian! 🔮

In this preliminary work, we derive a variational objective for probability flows 🌀 on manifolds with closed-form geodesics, and discuss some interesting results.

Dream team: Floor, Alison & Erik (their @ below) 💥

📜 arxiv.org/abs/2502.12981
🧵1/5
erikjbekkers.bsky.social
🚀 Excited to be part of this project led by Praneeta Konduri! We’re using state-of-the-art generative models to create synthetic vasculature geometries—pushing stroke treatment development forward while cutting down on patient data reliance. Exciting stuff! 😃 rdt.uva.nl/research/res...
Synthetic data to enhance new treatment uptake for acute ischemic stroke - Responsible Digital Transformations
Multiple (pre-)clinical trials are required in the regulatory trajectory to introduce new medical devices in clinical practice. The process is widely acknowledged as sub-optimal, resource-heavy, and t...
rdt.uva.nl
Reposted by Erik Bekkers
olgatticus.bsky.social
Variational Flow Matching goes Riemannian! 🔮

In this preliminary work, we derive a variational objective for probability flows 🌀 on manifolds with closed-form geodesics, and discuss some interesting results.

Dream team: Floor, Alison & Erik (their @ below) 💥

📜 arxiv.org/abs/2502.12981
🧵1/5
Reposted by Erik Bekkers
bokmangeorg.bsky.social
Common beliefs about equivariant networks for image input include 1) They are slow. 2) They don’t scale to ImageNet. 3) They are complicated. In my opinion, these three are all false. To argue against them, we made minimal modifications to popular vision models, turning them mirror-equivariant.
Reposted by Erik Bekkers
canaesseth.bsky.social
Really excited about this! We note a connection between diffusion/flow models and neural/latent SDEs. We show how to use this for simulation-free learning of fully flexible SDEs. We refer to this as SDE Matching and show speed improvements of several orders of magnitude.

arxiv.org/abs/2502.02472
SDE Matching: Scalable and Simulation-Free Training of Latent Stochastic Differential Equations
The Latent Stochastic Differential Equation (SDE) is a powerful tool for time series and sequence modeling. However, training Latent SDEs typically relies on adjoint sensitivity methods, which depend ...
arxiv.org
Reposted by Erik Bekkers
cgmsnoek.bsky.social
✨ The VIS Lab at the #University of #Amsterdam is proud and excited to announce it has #TWELVE papers 🚀 accepted for the leading #AI-#makers conference on representation learning ( #ICLR2025 ) in Singapore 🇸🇬. 1/n
👇👇👇 @ellisamsterdam.bsky.social
Reposted by Erik Bekkers
artemmoskalev.bsky.social
Accepted to ICLR 🚨 Does using more geometry always help with molecule property prediction? In practice, we deal with imperfect geometries, which introduce structural noise.

In our work arxiv.org/abs/2410.11933, we investigate when and how geometric information is useful (or not) for RNA molecules.
Beyond Sequence: Impact of Geometric Context for RNA Property Prediction
Accurate prediction of RNA properties, such as stability and interactions, is crucial for advancing our understanding of biological processes and developing RNA-based therapeutics. RNA structures can ...
arxiv.org
Reposted by Erik Bekkers
ellis.eu
ELLIS @ellis.eu · Jan 29
🚀 AI for Good Webinar Launch: From Molecules to Models

Next week, ELLIS kicks off a new webinar series on AI in life sciences, showcasing key research from ELLIS Programs.

🗓️ Date: Feb 3, 2025
🕓 Time: 16:00-17:30 CET

Register: aiforgood.itu.int/event/unlear...
Unlearning Toxicity in Multimodal Foundation Models & Learning to design protein-protein interactions with enhanced generalization
Part 1 (Rita Cucchiara): Foundation Models, pretrained on extremely large unknown source of data, contain in their embed space many information
aiforgood.itu.int
Reposted by Erik Bekkers
eijkelboomfloor.bsky.social
🐑 Come and check out Variational Flow Matching for Graph Generation next week at @neuripsconf.bsky.social ! 🐑

Wed 11 Dec 11 a.m. PST — 2 p.m. PST
West Ballroom A-D #7103

arxiv.org/abs/2406.04843
Reposted by Erik Bekkers
amlab.bsky.social
Meet our Lab's members: staff, postdocs and PhD students! :)

With this starter pack you can easily connect with us and keep up to date with all the member's research and news 🦋

go.bsky.app/8EGigUy
Reposted by Erik Bekkers
olgatticus.bsky.social
A starter pack for researchers interested in Geometric Deep Learning - in the broadest sense possible!

Let me know if you would like to be listed. :)

Thanks @sharvaree.bsky.social for the idea!

go.bsky.app/7h8sek
Reposted by Erik Bekkers
amlab.bsky.social
Soon, @erikjbekkers.bsky.social and @davidmknigge.bsky.social will give a talk elaborating even further on geometry-grounded representation learning in a NeurReps seminar. Make sure to mark the date! :)

⏰ November 21st, 4 PM CET
🔗 www.neurreps.org/speaker-seri...