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Réseau français de la recherche reproductible @reproductible-fr.bsky.social · 3d

👏 Many thanks to everyone who took part in the Replication Games on Friday, October 3rd!

6 teams joined the challenge, 5 in person and 1 online, bringing curiosity and collaboration to every step and making this event a truly inspiring collective experience around reproducibility & open science.

participants of the replication games held in Paris on october 3 2025 working on their article replications

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hmenager.bsky.social @hmenager.bsky.social · 8d

Congrats @abretaud.bsky.social

Galaxy Project @galaxyproject.bsky.social · 8d

On Day 2 of European Galaxy Days, Anthony Bretaudeau presented 'Modern genome browsing in Galaxy with Jbrowse2'.
Read more: https://usegalaxy.eu/root?tool_id=jbrowse2

##genomics ##jbrowse2 ##EGD2025 ##genome ##galaxyproject ##eosc ##fair ##genome_browsing ##open_science

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Open Bioinformatics Foundation @openbio.bsky.social · 10d

An open letter about the recent cuts at GigaScience: www.open-bio.org/2025/09/30/2...
(open for signatures until the end of October)

#OpenScience #OpenData #GigaScience

Scott Edmunds cuts the cake at the 2025 GigaScience birthday party at ISMB/ECCB 2025

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Bioinformatics Open Source Conference (BOSC) @bosc.bsky.social · Sep 9

Check out our #BOSC2025 report on @f1000publishing.bsky.social (It includes lots of pictures!) 🍐

f1000research.com/articles/14-...

F1000Research Article: BOSC 2025, the 26th Bioinformatics Open Source Conference.

Read the latest article version by Nomi L. Harris, Karsten Hokamp, Jessica Maia, Hervé Ménager, Monia C Munoz-Torres, Tazro Ohta, Deepak Unni, Jason Williams, at F1000Research.

f1000research.com

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Bioinformatics Open Source Conference (BOSC) @bosc.bsky.social · Jul 22

Tiffany Callahan chairing the "Ontologies and knowledge representation" session at #BOSC2025 / #BOKR2025 @bokr.bsky.social

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Bioinformatics Open Source Conference (BOSC) @bosc.bsky.social · Jul 22

Harry Caufield (@severaltimes.bsky.social) giving a BioPortal update at #BOSC2025 / #BOKR2025. You can try out BioPortal at bioportal.bioontology.org

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GigaScience Journal @gigascience.bsky.social · Jul 22

Phill Read presenting RO-Crate in #BOSC2025, we’ve been increasing numbers of papers with associated RO-Crates, and have a summer internship working on it at the moment #ISMBECCB2025

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hmenager.bsky.social @hmenager.bsky.social · Jul 22

Now at #BOSC2025 BOKR joint session: Harry Caufield "BioPortal: a rejuvenated resource for biomedical ontologies". BioPortal is now 20!

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hmenager.bsky.social @hmenager.bsky.social · Jul 22

Last talk of the session, AutopeptideML2 from Raúl Fernández-Díaz at #BOSC2025 BOKR.

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hmenager.bsky.social @hmenager.bsky.social · Jul 22

And now Gavin Farrell presents the DOME registry at #BOSC2025 BOKR

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hmenager.bsky.social @hmenager.bsky.social · Jul 22

Barath Dandala presents BMFM-RNA at #BOSC2025 BOKR joint session

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hmenager.bsky.social @hmenager.bsky.social · Jul 22

Python package is available on pypi.org/project/text....

texttoknowledgegraph

A Python package to generate BEL statements and CX2 networks.

pypi.org

hmenager.bsky.social @hmenager.bsky.social · Jul 22

Favour James presents textToKnowledgeGraph in the joint @bosc.bsky.social #BOSC2025 / BOKR session

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Jason Williams @jasonwilliamsny.bsky.social · Jul 22

Honored to open day two of #BOSC2025 and BOKR joint session at #ISMBECCB2025 introducing @cmungall.bsky.social as our opening keynote: Open Knowledge Bases in the Age of Generative AI

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hmenager.bsky.social @hmenager.bsky.social · Jul 21

@susheelvarma.com presented "The ELITE Portal: A FAIR Data Resource For Healthy Aging Over The Life Span" at #ISMBECCB25 #BOSC2025, reminding me of github.com/pjotrp/bioin... in advocacy of unix philosophy for legal interoperability. This is a recurring (and good) pattern at @bosc.bsky.social!

GitHub - pjotrp/bioinformatics: Tools for bioinformatics moved to http://git.genenetwork.org/pjotrp/bioinformatics

Tools for bioinformatics moved to http://git.genenetwork.org/pjotrp/bioinformatics - pjotrp/bioinformatics

github.com

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hmenager.bsky.social @hmenager.bsky.social · Jul 21

@monimunozto.bsky.social presents Bridge2AI at #ISMBECCB25 #BOSC2025

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Bioinformatics Open Source Conference (BOSC) @bosc.bsky.social · Jul 21

#CWL co-founder and project lead Michael Crusoe gave a moving tribute to Peter Amstutz, whose premature death was a great loss to the community. #BOSC2025

Michael Crusoe giving a tribute to Peter Amstutz

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hmenager.bsky.social @hmenager.bsky.social · Jul 21

Link to publication you might have missed during the @bosc.bsky.social #BOSC2025 talk "Analytical code sharing practices in biomedical research" from Serghei Mangul: doi.org/10.7717/peer...

Analytical code sharing practices in biomedical research

Data-driven computational analysis is becoming increasingly important in biomedical research, as the amount of data being generated continues to grow. However, the lack of practices of sharing researc...

doi.org

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hmenager.bsky.social @hmenager.bsky.social · Jul 21

From the #BOSC2025 organising committee chat during Christine Orengo's keynote:"it was a very good idea to start BOSC with a TED talk ;)"

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Varsha Khodiyar @varsha-khodiyar.bsky.social · Jul 21

@nomiharris.bsky.social kicking off #BOSC2025 at #ISMBECCB2025

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JOBIM 2025 @jobim2025.bsky.social · Jun 20

🖥️🧬 Le comité d'organisation de #JOBIM2025 remercie chaleureusement notre partenaire historique, l'Institut Français de Bioinformatique @ifb-elixir-fr.bsky.social, pour son soutien au congrès qui se tiendra du 8 au 11 juillet à Bordeaux.

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IFB - Institut Français de BioinformatiqueVisit our TwitterVisit our LinkedInVisit our YouTube channelclosebarsangle-double-upangle-double-downlinkedinfacebookpinterestyoutubersstwitterinstagramfacebo...

www.france-bioinformatique.fr

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IFB/ELIXIR-Fr @ifb-elixir-fr.bsky.social · Jun 5

✨📰🗓️Thank you @elixir-europe.org , we look forward to welcoming you to the next All Hands Meeting in 2026! #ELIXIR26 ✨
@cnrs-idf-villejuif.bsky.social @cnrsbiologie.bsky.social @cea.fr @inserm.fr @inrae-france.bsky.social

ELIXIR Europe @elixir-europe.org · Jun 5

🎊 2025 ELIXIR All Hands Meeting #ELIXIR25 has come to an end! 👏 Thank you all for joining us in Thessaloniki 🇬🇷 and we look forward to seeing you again next year in Lyon, France 🇫🇷 for #ELIXIR26! @ifb-elixir-fr.bsky.social

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IFB/ELIXIR-Fr @ifb-elixir-fr.bsky.social · Jun 13

JOBIM 2025 - Épisode 3/13
🚀 Venez découvrir notre poster « BYTE-Sea: the digital infrastructure of ATLASea, the French marine genome sequencing programme », par Annie Lebreton, Erwan Corre et le consortium #BYTE-Sea !

Bannière annonçant le poster "BYTE-Sea: the digital infrastructure of ATLASea, the French marine genome sequencing programme" pour la prochaine édition de JOBIM 2025, du 8 au 11 juillet à Bordeaux

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IFB/ELIXIR-Fr @ifb-elixir-fr.bsky.social · Jun 16

JOBIM 2025 - Épisode 4/13
🚀 Venez découvrir notre poster «  Breaking Myths: The Reality of Galaxy’s Capabilities and Impact », qui sera présenté par Gildas Le Corguillé , Anthony Bretaudeau, Björn Grüning , le GT Galaxy et @bebatut.bsky.social !

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