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in silico Plants @insilicoplants.bsky.social · 17h

from Ruiming Du, Guangxun Zhai, Tian Qiu, and Yu Jiang

in silico Plants @insilicoplants.bsky.social · 17h

Towards scalable organ-level 3D plant segmentation: Bridging the data–algorithm–computing gap
doi.org/10.48550/arX... via @arxiv-cs-cv.bsky.social #PlantScience #phenotyping

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in silico Plants @insilicoplants.bsky.social · 19h

by Manuel Fernandez Burda, Lucia Ferrero, Nicolás Gaggion, Camille Fonouni-Farde, The MoBiPlant Consortium, Martín Crespi, Federico Ariel, and Enzo Ferrante

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in silico Plants @insilicoplants.bsky.social · 19h

MoBiPlant: the first comprehensive benchmark for evaluating LLMs in plant molecular, developed by a consortium of 112 plant scientists across 19 countries
doi.org/10.1101/2025... via @biorxiv-plants.bsky.social #PlantScience

What Large Language Models Know About Plant Molecular Biology

Large language models (LLMs) are rapidly permeating scientific research, yet their capabilities in plant molecular biology remain largely uncharacterized. Here, we present MoBiPlant, the first…

doi.org

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in silico Plants @insilicoplants.bsky.social · 1d

by Maleana G Khoury, Kenneth S Berenhaut, Katherine E Moore, Edward E Allen, Alexandria F Harkey, Joëlle K Mühlemann, Courtney N Craven, Jiayi Xu, Suchi S Jain, David J John, James L Norris, Gloria K Muday

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in silico Plants @insilicoplants.bsky.social · 1d

New algorithm address the challenge of inferring GRNs from time series transcriptome data. This approach generates cohesive networks with minimal user input, revealing biologically meaningful neighborhoods.
doi.org/10.1093/insi... #PlantBiology #Transcriptomics #GRN

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in silico Plants @insilicoplants.bsky.social · 1d

Learn more at academic.oup.com/insilicoplan...

Instructions to Authors

in silico Plants is an international Open Access online journal. Published articles are fully peer reviewed and are available to anyone, anywhere free of charge

academic.oup.com

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in silico Plants @insilicoplants.bsky.social · 1d

📢 We're Now Accepting Commentaries
These are short discussion on current topics involving computational algorithms, software, models, frameworks, engines, languages and other tools that advance plant sciences.

Publishing is free, but please reach out with a pre-submission inquiry. #PlantScience

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in silico Plants @insilicoplants.bsky.social · 1d

Simulating C3-to-CAM transition under ancient atmospheric conditions
by Devlina Sarkar & Sudip Kundu
doi.org/10.1101/2025... via @biorxiv-plants.bsky.social #PlantScience

in silico Plants @insilicoplants.bsky.social · 2d

Check out starter pack I: go.bsky.app/KcVXefi

in silico Plants @insilicoplants.bsky.social · 2d

The starter pack consists of scientists involved in developing computational algorithms, software, models, and tools to advance plant sciences including mathematics, computer science, omics, plant biology, crop science, ecology, and forestry.

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in silico Plants @insilicoplants.bsky.social · 2d

🎉The Plant modelling scientists I starter pack has reached the maximum number of users!
Check out Plant modelling scientists II at go.bsky.app/NXSvwf7
Leave a comment below if you'd like to be added.

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in silico Plants @insilicoplants.bsky.social · 2d

by @DirkHelmrich Felix Maximilian Bauer, Mona Giraud, Andrea Schnepf, Jens Henrik Göbbert, Hanno Scharr, Ebba Þora Hvannberg, Morris Riedel

in silico Plants @insilicoplants.bsky.social · 2d

Introducing Synavis, a framework that generates synthetic data for training deep learning models using #UnrealEngine
doi.org/10.1093/insi... #PlantScience #DeepLearning #CPlantBox

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in silico Plants @insilicoplants.bsky.social · 2d

This is a Methods for Plant Modeling article
These articles describing software, tools, models, and other resources in an accessible way, making them suitable for educational use. See more at: academic.oup.com/insilicoplan...

in silico Plants @insilicoplants.bsky.social · 2d

NEW!
Predicting plant thermal responses using a temperature-aware plant metabolic model: A primer
by Philipp Wendering & Zoran Nikoloski
doi.org/10.1093/insi... #PlantScience

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in silico Plants @insilicoplants.bsky.social · 3d

by Hamish Brown, John McCallum, Paul Johnston, Meeghan Pither-Joyce, Richard Macknight, Neil Huth, Derrick Moot, Bangyou Zheng, Zhigan Zhao and Enli Wang

in silico Plants @insilicoplants.bsky.social · 3d

Integrating molecular and physiological approaches to quantify genetic controls for #wheat development and improve #phenotyping
doi.org/10.1101/2025... @biorxiv-plants.bsky.social #PlantScience

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in silico Plants @insilicoplants.bsky.social · 3d

by Serena Lotreck, Kenia Segura Abá, Melissa D Lehti-Shiu, Abigail Seeger, Brianna N I Brown, Thilanka Ranaweera, Ally Schumacher, Mohammad Ghassemi, Shin-Han Shiu

in silico Plants @insilicoplants.bsky.social · 3d

Discover the Plant Science Knowledge Graph Corpus, molecular plant science abstracts annotated with entities and relations. Check it out here: doi.org/10.1093/insi... #PlantScience #MolecularBiology #ResearchData

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in silico Plants @insilicoplants.bsky.social · 6d

by Ha Rang Shin, Yu Hyun Moon, Ha Seon Sim, Tae Yeon Lee, Soo Bin Jung, Yong Jun Kim, Na Kyoung Kim, JinWoo Lee, Tae Hyun Kim, Seunghyun Ban, Sung Kyeom Kim

in silico Plants @insilicoplants.bsky.social · 6d

Simulation of dry matter partitioning in #cucumber fruits: reflecting gas exchange characteristics based on leaf position and cropping type
via doi.org/10.1093/hr/u... via Horticulture Research #photosynthesis #plantScience

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in silico Plants @insilicoplants.bsky.social · 6d

by Achraf Mamassi, Marie Lang, Bernard Tychon, Mouanis Lahlou, Joost Wellens, Mohamed El Gharous, Hélène Marrou

in silico Plants @insilicoplants.bsky.social · 6d

🌾🌧️ Analyzing empirical vs. mechanistic approaches for predicting #wheat harvests at the field level in Morocco's rainfed regions. Discover more: doi.org/10.1093/insi...

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in silico Plants @insilicoplants.bsky.social · 7d

☀️ 🌾 Using e-Photosynthesis to predict optimal protein allocation for maximum carbon assimilation in rice
by @svijayakumar32.bsky.social Yu Wang, Hsiang Chun Lin @ecarmosilva.bsky.social Stephen Long and Samuel Taylor
doi.org/10.1093/insi... #photosynthesis #PlantScience

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