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Jan Gogarten

@jangogarten.bsky.social

1.2K followers 900 following 89 posts

Evolutionary community ecologist interested in disease emergence. Work with environmental DNA, primates, bacteriophages. Like bicycles. Heading a junior research group at the Helmholtz Institute for One Health.

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Jan Gogarten @jangogarten.bsky.social · Dec 4

Hello! I am new + while I know some of you from real life or the giant dumpster fire around which we formerly shared tweets, I wanted to make a little introductory post (skeet?). I am a disease ecologist + evolutionary biologist broadly interested in disease emergence + community assembly.

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Reposted by Jan Gogarten

Michael Ian Black @michaelianblack.bsky.social · 8h

We're already at the hiding people from the secret police phase?

Sophie Sherry @sophiesherry.bsky.social · 16h

During a military-style raid on a building in Chicago’s South Shore, one resident heard a knock on his door.   It wasn’t the feds — it was a mom and her 7-year-old daughter, pleading for help.

He let them hide in his unit for the next 3 days.

chicago.suntimes.com/immigration/...

Neighbor shielded 7-year-old during South Shore federal raid: ‘I didn’t want them to take her’

During the Sept. 30 raid one tenant protected a terrified girl and her mom. Remnants at the complex, including a detailed map of all the units, offer clues to what authorities may have known before th...

chicago.suntimes.com

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Reposted by Jan Gogarten

Dave Levitan @davelevitan.bsky.social · 1d

EXTREMELY COOL BAT STUFF: A study out in Science today found that the greater noctule bat, Europe's largest, hunts and catches *migrating birds* while in flight. In at least one case, a bat climbed to more than 1200 feet, then chased a robin downward FAST until it caught it near the ground.

Greater noctule bats prey on and consume passerines in flight

Despite billions of passerines seasonally migrating during the night at high altitudes, only three bat species have been found to consistently tap into this rich prey resource. However, it remains unk...

www.science.org

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Reposted by Jan Gogarten

Dave Hemprich-Bennett @davehb.bsky.social · 9d

New preprint alert! We DNA barcoded 95 thousand Ghanaian arthropods, more than doubling the number of BINs (a species proxy) available online from West Africa. In doing so we’ve released a huge amount of new data to scientists studying the region 🧪 www.biorxiv.org/content/10.1...

Characterising a species-rich and understudied tropical insect fauna using DNA barcoding

Background: West Africa has high biodiversity that is relatively understudied, especially for insects. Studies of West African arthropod diversity can therefore help address important questions regard...

www.biorxiv.org

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Jan Gogarten @jangogarten.bsky.social · 11d

The NSF GRFP was a huge help for me along my academic journey - and I had to apply multiple times to get there. These last minute changes to eligibility are cruel and if you are impacted - please do sign.

laurenkuehne.github.io/grfpChanges/

Petition to NSF to Restore Eligibility for the 2026 Graduate Research Fellowship Program Competition

laurenkuehne.github.io

Jan Gogarten @jangogarten.bsky.social · 16d

What a clever intervention to reduce malaria risk among babies! www.nejm.org/doi/full/10....

Permethrin-Treated Baby Wraps for the Prevention of Malaria | NEJM

Malaria remains a major cause of childhood death in sub-Saharan Africa. We leveraged the traditional practice of mothers carrying children on their backs in cloth wraps to assess whether treating t...

www.nejm.org

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Reposted by Jan Gogarten

Helmholtz Institute for One Health (HIOH) @helmholtz-hioh.bsky.social · Sep 5

New study by the Institut Pasteur de Bangui and HIOH examines CAR #mpox outbreaks via genomic #epidemiology. High frequencies of independent spillovers highlight the need to strengthen systematic surveillance & identify animal sources to prevent future outbreaks www.sciencedirect.com/science/arti...

Three researchers preparing samples for high-throughput sequencing in the laboratories of the Genomic Surveillance Platform of the Institut Pasteur de Bangui.

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Jan Gogarten @jangogarten.bsky.social · Sep 5

Great and fast work to sequence the genome of the new Ebola out break in DRC. Impressive! virological.org/t/the-16th-e...

The 16th Ebola Virus Disease Outbreak in Bulape Health Zone, Kasai, Democratic Republic of the Congo: A new spillover event from an unknown reservoir host

Background The Democratic Republic of the Congo (DRC) is currently facing concurrent outbreaks including mpox, cholera and malaria (1-4). The Ministry of Public Health, DRC has declared the 16th Ebola...

virological.org

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Jan Gogarten @jangogarten.bsky.social · Aug 10

Except this one :) www.nature.com/articles/s41.... I will try to keep it in mind for upcoming studies and then you can donate the 20 dollars :)

A minimum data standard for wildlife disease research and surveillance - Scientific Data

Scientific Data - A minimum data standard for wildlife disease research and surveillance

www.nature.com

Jan Gogarten @jangogarten.bsky.social · Aug 8

I hope there is a good way though to create a easily accessible and useable collection of all the efforts people are making - would be great to see :)

Jan Gogarten @jangogarten.bsky.social · Aug 8

These sorts of data on the other hand are perhaps less likely to be used by most of the data generators - so there might be less uptake to upload and figure out the process? Not sure though what the psychology is.

Jan Gogarten @jangogarten.bsky.social · Aug 8

Mandates to make sequence data available also did wonders and perhaps that’ll work down the line, once uptake has shown it to be a community resource people bought into. I feel like sequence databases worked well in part also because sequence generators were also publishing using other’s sequences.

Jan Gogarten @jangogarten.bsky.social · Aug 8

And acknowledging all the work data generators are doing to drive meta analyses forward seems fair somehow. Even if just for the ,here is this resource introduction paper’ for a database. Bringing field people and lab folks into these efforts from the ground up might help if they weren’t already.

Jan Gogarten @jangogarten.bsky.social · Aug 8

But I guess the idea of doing all of this is that folks can use the data to do publishable things with them - and I imagine you will have an idea or two for meta analyses too ;) All that to say, publications are a key metric for many and might be a better motivator than 20$ but just an idea.

Jan Gogarten @jangogarten.bsky.social · Aug 8

‘Their work’ not ‘they work’ - baby induced exhaustion :)

Jan Gogarten @jangogarten.bsky.social · Aug 8

What about offering co-authorship in exchange for people’s efforts generating, curating, and sharing the data that is the building block for all sorts of analyses? So much time and effort goes into they work - I think that would be much more likely to generate interest than 20$ - and seems fair?

Reposted by Jan Gogarten

Mark A. Hanson @hansonmark.bsky.social · Aug 4

If I could change one thing about #ScientificPublishing I'd ask funding bodies to stipulate all work they fund be published in non-profit journals.

The knock-on effects would alleviate most of the strain on #AcademicSky.

This isn't hard. It's big, but actually, it's pretty easy.

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The strain on scientific publishing

Abstract. Scientists are increasingly overwhelmed by the volume of articles being published. The total number of articles indexed in Scopus and Web of Science has grown exponentially in recent years; ...

direct.mit.edu

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