Jon Mifsud
@jonathonmifsud.bsky.social
1.4K followers
640 following
20 posts
Postdoc @ KU Leuven | Virus evolution 🧬👨💻
Posts
Media
Videos
Starter Packs
Reposted by Jon Mifsud
Reposted by Jon Mifsud
Reposted by Jon Mifsud
Reposted by Jon Mifsud
Reposted by Jon Mifsud
Jon Mifsud
@jonathonmifsud.bsky.social
· Aug 25
Recent advances in the inference of deep viral evolutionary history | Journal of Virology
Phylogenetic studies examining the origins, emergence, and spread of viruses have arguably been one of the most active and successful areas of evolutionary biology and form the bedrock of the flourishing field of genomic epidemiology. This, in part, reflects the ability of viruses, particularly those with RNA genomes, to evolve at rates much greater than their cellular counterparts (1). The rapid rate at which viruses evolve and accumulate mutations enables evolutionary signals to be identified through comparative genomics at short timescales relevant for outbreak investigation and response. The integration of phylogenetics and epidemiology, known as phylodynamics, has become a vital tool in response to numerous viral outbreaks, epidemics, and pandemics, including Ebola (2), Zika (3), and, more recently, COVID-19 (4) and mpox (5).
journals.asm.org
Reposted by Jon Mifsud
Reposted by Jon Mifsud
Reposted by Jon Mifsud
MicroSeq2025
@microseqasm.bsky.social
· Sep 3
Reposted by Jon Mifsud
Jon Mifsud
@jonathonmifsud.bsky.social
· Aug 26
Jon Mifsud
@jonathonmifsud.bsky.social
· Aug 26
Jon Mifsud
@jonathonmifsud.bsky.social
· Aug 25
Jon Mifsud
@jonathonmifsud.bsky.social
· Aug 25
Recent advances in the inference of deep viral evolutionary history | Journal of Virology
Phylogenetic studies examining the origins, emergence, and spread of viruses have arguably been one of the most active and successful areas of evolutionary biology and form the bedrock of the flourishing field of genomic epidemiology. This, in part, reflects the ability of viruses, particularly those with RNA genomes, to evolve at rates much greater than their cellular counterparts (1). The rapid rate at which viruses evolve and accumulate mutations enables evolutionary signals to be identified through comparative genomics at short timescales relevant for outbreak investigation and response. The integration of phylogenetics and epidemiology, known as phylodynamics, has become a vital tool in response to numerous viral outbreaks, epidemics, and pandemics, including Ebola (2), Zika (3), and, more recently, COVID-19 (4) and mpox (5).
journals.asm.org
Reposted by Jon Mifsud
Nate Corley
@ncorley.bsky.social
· Aug 15
Accelerating Biomolecular Modeling with AtomWorks and RF3
Deep learning methods trained on protein structure databases have revolutionized biomolecular structure prediction, but developing and training new models remains a considerable challenge. To facilita...
www.biorxiv.org
Reposted by Jon Mifsud
Reposted by Jon Mifsud
George Bouras
@gbouras13.bsky.social
· Aug 8
Protein Structure Informed Bacteriophage Genome Annotation with Phold
Bacteriophage (phage) genome annotation is essential for understanding their functional potential and suitability for use as therapeutic agents. Here we introduce Phold, an annotation framework utilis...
www.biorxiv.org
Reposted by Jon Mifsud
Curtis Suttle
@virosphere.bsky.social
· Aug 5
Reposted by Jon Mifsud
Yo Akiyama
@yoakiyama.bsky.social
· Aug 5
Scaling down protein language modeling with MSA Pairformer
Recent efforts in protein language modeling have focused on scaling single-sequence models and their training data, requiring vast compute resources that limit accessibility. Although models that use ...
biorxiv.org
Reposted by Jon Mifsud
Reposted by Jon Mifsud
Simon Roux
@simrouxvirus.bsky.social
· Jul 22