Jon Mifsud
@jonathonmifsud.bsky.social
1.4K followers 640 following 20 posts
Postdoc @ KU Leuven | Virus evolution 🧬👨‍💻
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Reposted by Jon Mifsud
cpuentelelievre.bsky.social
Save the date! the SMBE Australasian Protein Structural Phylogenetics Meeting #APSPM will take place on 15 - 18 February, 2026 at the University of Queensland in Brisbane, Australia. More details coming up soon. Registration will be free thanks to the generous support of @official-smbe.bsky.social
Reposted by Jon Mifsud
spyroslytras.bsky.social
what a fantastic ted talk!! for those of you who haven't heard of "sociovirology" before or still wonder why it might be important this is the video to watch! 😁
asherleeks.bsky.social
I gave a talk last year at TEDxNewEngland aimed at introducing the idea of viral sociality to a general audience, including implications for evolution & virology. Video now available online below.

#socialviruses #evosky #virosky 🧪
The social lives of viruses | Asher Leeks | TEDxNewEngland
YouTube video by TEDx Talks
www.youtube.com
Reposted by Jon Mifsud
evbc.bsky.social
📢Join us for the next ECR #Viromics Webinar:
"Characterising novel viral proteins using protein language models (PLMs)"
‍🎙️ Kieran Lamb (@kieranlamb.bsky.social) | University of Glasgow/UK
🗓️ 8 October 2025, 4 PM CEST
📍 Online | Zoom (register for login details)
👉 coms.osu.edu/webinars/ecr...
Reposted by Jon Mifsud
grovearmada.bsky.social
🚨 New Web Resource Alert! 🚨 We're delighted to share Viro3D a database of >85000 viral protein structure predictions from >4400 human & animal viruses.

🔗 viro3d.cvr.gla.ac.uk
📄 www.embopress.org/doi/full/10....

@molsystbiol.org @cvrinfo.bsky.social @uofgmvls.bsky.social #Virology #AlphaFold 🧪 🦠
Viro3D
viro3d.cvr.gla.ac.uk
Reposted by Jon Mifsud
grovearmada.bsky.social
Check out this new BBC documentary on Disease X and pandemic preparedness, broadcast tonight (22/09) and on BBC iPlayer.

It features @cvrinfo.bsky.social's work using #AI to investigate #virology and much, much more. 🧪🦠🤖

It was a real pleasure working with Chris VT and the team. Thank you!
Reposted by Jon Mifsud
cpuentelelievre.bsky.social
This review highlights how structural phylogenetics and time-dependent rate Bayesian models provide new tools to uncover deep viral evolution beyond outbreak timescales.
Reposted by Jon Mifsud
rayanchikhi.bsky.social
🌎👩‍🔬 For 15+ years biology has accumulated petabytes (million gigabytes) of🧬DNA sequencing data🧬 from the far reaches of our planet.🦠🍄🌵

Logan now democratizes efficient access to the world’s most comprehensive genetics dataset. Free and open.

doi.org/10.1101/2024...
Reposted by Jon Mifsud
microseqasm.bsky.social
🐢Keeping up the #virology momentum is @lrnlm.bsky.social, exploring the metatranscriptomes of necropsied turtles. Check out the wide range of #parasites, #bacteria, and #viruses identified in these tissues! #MicroSeeq2025
Reposted by Jon Mifsud
microseqasm.bsky.social
Some more incredibly valuable advice from Jackie: refine experimental designs, be critical of bioinformatic output, and perhaps most importantly, name your novel viruses something that brings you joy! Like Jackie’s coolest virus name: Lilsebastian narna-like virus.
Reposted by Jon Mifsud
microseqasm.bsky.social
#MicroSeq2025 Plenary Highlight! ✨
Dr Jackie Mahar is an evolutionary virologist & bioinformatician based at CSIRO, managing projects on NGS-based phylogenomics of zoonotic & animal viruses for pathogen discovery, surveillance & viral ecology.
Register👇
trybooking.com/events/landing/1424679
Photograph of Dr Jackie Mahar, a researcher based at Agriculture Victoria Research. Her portrait is decorated with cartoons of microbes. Dr Jackie Mahar is an invited plenary speaker for MicroSeq2025.
jonathonmifsud.bsky.social
Thanks Ricardo 🙏🏻
Reposted by Jon Mifsud
ncorley.bsky.social
(1/7)
Training biomolecular foundation models shouldn't be so hard. And open-source structure prediction is important. So today we're releasing two software packages: AtomWorks and RosettaFold3 (RF3)

[https://www.biorxiv.org/content/10.1101/2025.08.14.670328v2](www.biorxiv.org/content/10.1...)
Accelerating Biomolecular Modeling with AtomWorks and RF3
Deep learning methods trained on protein structure databases have revolutionized biomolecular structure prediction, but developing and training new models remains a considerable challenge. To facilita...
www.biorxiv.org
Reposted by Jon Mifsud
jnoms.bsky.social
A formal ad will be forthcoming soon, but I will be hiring at all levels! If my work is interesting to you, and you are looking for a staff scientist, postdoc, or lab tech position in lovely Vienna, please send CV/cover letter to jason(dot)nomburg(at)gladstone(dot)ucsf(dot)edu
PhD Program
www.oeaw.ac.at
Reposted by Jon Mifsud
virosphere.bsky.social
Very proud of the work from lab members and collaborators that coincidentally came out today www.pnas.org/doi/10.1073/... and www.nature.com/articles/s41.... A bacterial and viral pathogen associated with mass mortality in seastars and oysters. @kevinzhong2006.bsky.social @rhizalyssa.bsky.social
Reposted by Jon Mifsud
grovearmada.bsky.social
Excited to share our work at the interface of virology and AI at two upcoming events!

Will present Viro3D (our virus structure database: viro3d.cvr.gla.ac.uk), recent Nature paper on Flaviviruses (www.nature.com/articles/s41...), plus brand new work.

#Virology #AI #Research
Viro3D
viro3d.cvr.gla.ac.uk
Reposted by Jon Mifsud
simrouxvirus.bsky.social
We (with Clement Coclet, not on Bsky) had the chance to work on a broad "state of viromics" review. We tried to use this to give an overview of how the field changed over the last ~ 15 years, and also what we think are some of the major remaining challenges. Full-text access at -> rdcu.be/excHt