Joshua Ricouvier
@jricou.bsky.social
Building the future molecule by molecule
Artificial cells in microfluidic devices
Curious about science
Artificial cells in microfluidic devices
Curious about science
Reposted by Joshua Ricouvier
New on @biorxiv!!!!!!
We’re excited to share our latest paper on combining cell-free systems and machine learning to express full genome in vitro.
Check it out now! 👉 www.biorxiv.org/content/10.1...
Catch us at SEED in Houston this June to discuss this work.
#CellFree
We’re excited to share our latest paper on combining cell-free systems and machine learning to express full genome in vitro.
Check it out now! 👉 www.biorxiv.org/content/10.1...
Catch us at SEED in Houston this June to discuss this work.
#CellFree
June 5, 2025 at 8:41 AM
New on @biorxiv!!!!!!
We’re excited to share our latest paper on combining cell-free systems and machine learning to express full genome in vitro.
Check it out now! 👉 www.biorxiv.org/content/10.1...
Catch us at SEED in Houston this June to discuss this work.
#CellFree
We’re excited to share our latest paper on combining cell-free systems and machine learning to express full genome in vitro.
Check it out now! 👉 www.biorxiv.org/content/10.1...
Catch us at SEED in Houston this June to discuss this work.
#CellFree
Congratulations to Noa Avidan who defended her PhD supervised by Pr Roy Bar-Ziv in front of Pr Ada Yonath
at the Weizmann Institute of Science
Autonomous synthesis of ribosomal large subunit intermediates in a minimal system
at the Weizmann Institute of Science
Autonomous synthesis of ribosomal large subunit intermediates in a minimal system
April 23, 2025 at 3:18 PM
Congratulations to Noa Avidan who defended her PhD supervised by Pr Roy Bar-Ziv in front of Pr Ada Yonath
at the Weizmann Institute of Science
Autonomous synthesis of ribosomal large subunit intermediates in a minimal system
at the Weizmann Institute of Science
Autonomous synthesis of ribosomal large subunit intermediates in a minimal system
Reposted by Joshua Ricouvier
Disentangling microbial interaction networks
www.cell.com/trends/micro...
www.cell.com/trends/micro...
March 11, 2025 at 9:57 AM
Disentangling microbial interaction networks
www.cell.com/trends/micro...
www.cell.com/trends/micro...
Reposted by Joshua Ricouvier
New study in @cellpress.bsky.social by Allen Distinguished Investigator @elowitzlab.bsky.social and collaborators explores the versatility of protein dimers. #FrontierScience
🔗 www.cell.com/cell/fulltex...
🔗 www.cell.com/cell/fulltex...
February 19, 2025 at 6:42 PM
New study in @cellpress.bsky.social by Allen Distinguished Investigator @elowitzlab.bsky.social and collaborators explores the versatility of protein dimers. #FrontierScience
🔗 www.cell.com/cell/fulltex...
🔗 www.cell.com/cell/fulltex...
Reposted by Joshua Ricouvier
Build-a-cell seminar with Roy Bar-Ziv
youtu.be/yvbPmAS_cPM?...
youtu.be/yvbPmAS_cPM?...
Build-a-Cell seminar Roy Bar-Ziv: Toward autonomous DNA compartments in 2D
YouTube video by Build-a-Cell
youtu.be
February 10, 2025 at 8:48 AM
Build-a-cell seminar with Roy Bar-Ziv
youtu.be/yvbPmAS_cPM?...
youtu.be/yvbPmAS_cPM?...
Reposted by Joshua Ricouvier
Our review, What remains from living cells in bacterial lysate-based cell-free systems, is available on HAL (the french open archive):
hal.science/hal-04118475...
hal.science/hal-04118475...
February 13, 2025 at 10:39 AM
Our review, What remains from living cells in bacterial lysate-based cell-free systems, is available on HAL (the french open archive):
hal.science/hal-04118475...
hal.science/hal-04118475...
Reposted by Joshua Ricouvier
Finally published: A fluorescence microscope that performs microscale MRI using NV centers in diamond. www.nature.com/articles/s41... 🔬💎 #QuantumTech #MRI #NMR #Microscopy
February 6, 2025 at 8:13 PM
Finally published: A fluorescence microscope that performs microscale MRI using NV centers in diamond. www.nature.com/articles/s41... 🔬💎 #QuantumTech #MRI #NMR #Microscopy
Reposted by Joshua Ricouvier
Nature research paper: De novo designed proteins neutralize lethal snake venom toxins
https://go.nature.com/4fZU9EI
https://go.nature.com/4fZU9EI
De novo designed proteins neutralize lethal snake venom toxins - Nature
Deep learning methods have been used to design proteins that can neutralize the effects of three-finger toxins found in snake venom, which could lead to the development of safer and more accessible antivenom treatments.
go.nature.com
January 16, 2025 at 1:15 PM
Nature research paper: De novo designed proteins neutralize lethal snake venom toxins
https://go.nature.com/4fZU9EI
https://go.nature.com/4fZU9EI
Reposted by Joshua Ricouvier
A cell-free biosensor signal amplification circuit with polymerase strand recycling
www.nature.com/articles/s41...
www.nature.com/articles/s41...
A cell-free biosensor signal amplification circuit with polymerase strand recycling - Nature Chemical Biology
A signal amplification circuit based on recycling nucleic acid inputs with RNA polymerase off-target transcription improves the sensitivity of transcription factor-based cell-free biosensors, achievin...
www.nature.com
January 14, 2025 at 7:24 PM
A cell-free biosensor signal amplification circuit with polymerase strand recycling
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Reposted by Joshua Ricouvier
Five years of hard work has paid off! 🎉 What a nice new year surprise—we made it to the cover of Nature Microbiology! 🌟
Acknowledgment to all co-authors and specially Elisa Atza for producing this cover image!
Acknowledgment to all co-authors and specially Elisa Atza for producing this cover image!
Our first issue of 2025 has gone live, featuring...
🥗microbial roles in diet and food insecurity
🛶freshwater microbial dynamics
📈SARS-CoV-2 spike evolution
🚨bacterial danger signals
🥔microbiomes forecasting spud vigor
...and more. Check it out here 👇
www.nature.com/nmicrobiol/v...
🥗microbial roles in diet and food insecurity
🛶freshwater microbial dynamics
📈SARS-CoV-2 spike evolution
🚨bacterial danger signals
🥔microbiomes forecasting spud vigor
...and more. Check it out here 👇
www.nature.com/nmicrobiol/v...
January 11, 2025 at 12:41 AM
Five years of hard work has paid off! 🎉 What a nice new year surprise—we made it to the cover of Nature Microbiology! 🌟
Acknowledgment to all co-authors and specially Elisa Atza for producing this cover image!
Acknowledgment to all co-authors and specially Elisa Atza for producing this cover image!
Applications of bacteriophages in precision engineering of the human gut microbiome
doi.org/10.1016/j.en...
doi.org/10.1016/j.en...
Redirecting
doi.org
January 9, 2025 at 6:38 PM
Applications of bacteriophages in precision engineering of the human gut microbiome
doi.org/10.1016/j.en...
doi.org/10.1016/j.en...
Reposted by Joshua Ricouvier
First paper of the year is out! A collaboration with Tzion Fahima @University of Haifa with heavy lifting by Tamara Reveguk, who was a pleasure to co-supervise. We generated an atlas of tandem kinase proteins (TKPs). TKPs are known to confer disease resistance in monocots. 🧵(1/4)
rdcu.be/d5ADS
rdcu.be/d5ADS
Tandem kinase proteins across the plant kingdom
Nature Genetics - This genomic analysis of tandem kinase proteins across 104 plant species highlights their mechanisms of convergent molecular evolution and potential roles in plant immunity.
rdcu.be
January 8, 2025 at 10:09 PM
First paper of the year is out! A collaboration with Tzion Fahima @University of Haifa with heavy lifting by Tamara Reveguk, who was a pleasure to co-supervise. We generated an atlas of tandem kinase proteins (TKPs). TKPs are known to confer disease resistance in monocots. 🧵(1/4)
rdcu.be/d5ADS
rdcu.be/d5ADS
Reposted by Joshua Ricouvier
Integrating bioelectronics with cell-based synthetic biology
www.nature.com/articles/s44...
www.nature.com/articles/s44...
Integrating bioelectronics with cell-based synthetic biology - Nature Reviews Bioengineering
Biohybrid devices based on engineered cells interfaced with bioelectronics combine the strengths of each field, resulting in constructs with properties that are not otherwise achievable. In this Revie...
www.nature.com
January 9, 2025 at 6:05 PM
Integrating bioelectronics with cell-based synthetic biology
www.nature.com/articles/s44...
www.nature.com/articles/s44...
Reposted by Joshua Ricouvier
Exciting new #synbio engineered living materials work from Chao Zhong, Peng Huang and Bolin An's team in Shenzhen has just come out on bioRxiv. Lovely demonstration of how engineered E.coli can sense and treat in vivo.
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
January 5, 2025 at 10:50 PM
Exciting new #synbio engineered living materials work from Chao Zhong, Peng Huang and Bolin An's team in Shenzhen has just come out on bioRxiv. Lovely demonstration of how engineered E.coli can sense and treat in vivo.
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
Reposted by Joshua Ricouvier
Happy to kick off 2025 with this new review on gut microbiota-neuroepithelial signaling by the very talented Taka Ohara!
January 4, 2025 at 9:50 AM
Happy to kick off 2025 with this new review on gut microbiota-neuroepithelial signaling by the very talented Taka Ohara!
Reposted by Joshua Ricouvier
1/n Some time ago my colleague, excellent cook, and friend Ivan told me: "Cacio e pepe is the recipe that I screw up more often. Let's make a project studying systematically the physics of that sauce".
Prepare to get cheesy, I'm glad to share the Cacio e paper preprint:
arxiv.org/abs/2501.00536
Prepare to get cheesy, I'm glad to share the Cacio e paper preprint:
arxiv.org/abs/2501.00536
January 4, 2025 at 9:34 AM
1/n Some time ago my colleague, excellent cook, and friend Ivan told me: "Cacio e pepe is the recipe that I screw up more often. Let's make a project studying systematically the physics of that sauce".
Prepare to get cheesy, I'm glad to share the Cacio e paper preprint:
arxiv.org/abs/2501.00536
Prepare to get cheesy, I'm glad to share the Cacio e paper preprint:
arxiv.org/abs/2501.00536
Reposted by Joshua Ricouvier
I remember doing this maze with our lab after lunch one day! Great work on collective cognition comparing humans vs. ants in trying to solve a maze by Dreyer et al. www.pnas.org/doi/10.1073/...
December 26, 2024 at 11:43 AM
I remember doing this maze with our lab after lunch one day! Great work on collective cognition comparing humans vs. ants in trying to solve a maze by Dreyer et al. www.pnas.org/doi/10.1073/...
Reposted by Joshua Ricouvier
Building a capacity for making Turing patterns into bacteria. This is very cool.
www.cell.com/cell-systems...
www.cell.com/cell-systems...
A three-node Turing gene circuit forms periodic spatial patterns in bacteria
Engineering Turing patterns has been one of the most challenging problems in synthetic biology because even tiny changes in the reaction parameters destroy patterning. Here, the authors construct a more robust three-node genetic circuit in E. coli to generate different kinds of reproducible spot and stripe patterns.
www.cell.com
December 18, 2024 at 6:03 PM
Building a capacity for making Turing patterns into bacteria. This is very cool.
www.cell.com/cell-systems...
www.cell.com/cell-systems...
Reposted by Joshua Ricouvier
There are always many ways to look at your data.
December 19, 2024 at 12:16 PM
There are always many ways to look at your data.
Reposted by Joshua Ricouvier
This is our latest preprint about the biogenesis of the translation proteins in a minimal translation system (PURE). www.biorxiv.org/content/10.1...
December 17, 2024 at 9:39 AM
This is our latest preprint about the biogenesis of the translation proteins in a minimal translation system (PURE). www.biorxiv.org/content/10.1...
Reposted by Joshua Ricouvier
Tracking transcription–translation coupling in real time
doi.org/10.1038/s415...
doi.org/10.1038/s415...
Tracking transcription–translation coupling in real time - Nature
Single-molecule fluorescence microscopy experiments with a recombinant Escherichia coli transcription–translation system provides insights into the coordination of the transcription and translation ma...
doi.org
December 4, 2024 at 9:14 PM
Tracking transcription–translation coupling in real time
doi.org/10.1038/s415...
doi.org/10.1038/s415...
Reposted by Joshua Ricouvier
The cellular dogma
www.cell.com/cell/fulltex...
www.cell.com/cell/fulltex...
The cellular dogma
In this essay, I will put forth what I see as a major conceptual challenge for biology
in the next decade, one that is inspired by Crick’s Central Dogma: understanding information
flow in the cell in ...
www.cell.com
December 2, 2024 at 7:58 AM
The cellular dogma
www.cell.com/cell/fulltex...
www.cell.com/cell/fulltex...
My latest article is out! 1000 artificial cells synchronize in 2D and collective behavior emerges!
#microfluidics #artificialcells #syntheticcells #cellfreeexpression
doi.org/10.1038/s414...
#microfluidics #artificialcells #syntheticcells #cellfreeexpression
doi.org/10.1038/s414...
Large-scale-integration and collective oscillations of 2D artificial cells - Nature Communications
Large-scale-integration of artificial cells on a chip can reveal emergent multicellular phenomena. Here, authors report 2D coupled lattices of artificial cells programmed by genetic oscillators, exhib...
doi.org
November 25, 2024 at 2:36 PM
My latest article is out! 1000 artificial cells synchronize in 2D and collective behavior emerges!
#microfluidics #artificialcells #syntheticcells #cellfreeexpression
doi.org/10.1038/s414...
#microfluidics #artificialcells #syntheticcells #cellfreeexpression
doi.org/10.1038/s414...