Lightnews — Scholar-powered news

LightNews

Jean-Yves Tinevez

@jytinevez.bsky.social

2K followers 670 following 240 posts

Research engineer and core facility manager at the Institut Pasteur https://research.pasteur.fr/en/team/image-analysis-hub/ Everything #TrackMate #Mastodon-sc (the tool to track lineages in microscopy videos, not the social networks etc). Views are my own .. more

Biology 51%

Engineering 10%

more

Posts Media Videos Starter Packs

Pinned

Jean-Yves Tinevez @jytinevez.bsky.social · 2d

Job alert!

We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks?

See also on the forum:
forum.image.sc/t/research-e...

Research engineer in Bioimage Analysis for the researchers of the inIdEx FORMULA

Hi all We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks? The position is in the Instit...

Reposted by Jean-Yves Tinévez

Institut Pasteur | 130 years of biomedical research @pasteur.fr · 1d

Pour le Pasteurdon, on a donné des appareils photos aux chercheurs 📸👩‍🔬
Voici ce qu’ils ont capturé ! 
#pasteurdon

Reposted by Jean-Yves Tinévez

DrLachie @drlachie.bsky.social · 2d

Hey microscopists! On behalf of @ausbias.org I'd like to invite you to fill in our inaugural survey of how you perform and interface with bioimage analysis in your work! Help shape our society, and help us understand how we can best serve the wider microscopy community! ausbias.org/survey-2025/

Reposted by Jean-Yves Tinévez

Morgan Schwartz @msschwartz21.bsky.social · 2d

#geff v1 is released! 🎉 GEFF is a zarr-based Graph Exchange File Format with special support for tracking applications in Python and Java. Thank you to all the amazing developers who contributed at the Janelia 2025 Trackathon! liveimagetrackingtools.org/geff/

Jean-Yves Tinevez @jytinevez.bsky.social · 2d

Do not hesitate to contact me to have more information about the position, what it’s like to work in Pasteur, in a core ... Also, do not hesitate to contact anyone from the team (research.pasteur.fr/en/team/imag...) to know what it’s like to work in the team .

It’s going to be great; apply.

Image Analysis Hub - Research

The Image Analysis Hub is an open-access / equal-access core facility committed to sharing bioimage analysis services expertise with the scientific community. What we do The IAH works by collaborating...

research.pasteur.fr

Jean-Yves Tinevez @jytinevez.bsky.social · 2d

But as always: Do you feel like addressing fantastic questions in Life-Sciences and develop the tools to do so? Please apply! Or please transfer this announcement to your network if you know a candidate.

Image Analysis Hub - Research

The Image Analysis Hub is an open-access / equal-access core facility committed to sharing bioimage analysis services expertise with the scientific community. What we do The IAH works by collaborating...

research.pasteur.fr

Jean-Yves Tinevez @jytinevez.bsky.social · 2d

The position is in the Institut @pasteur.fr, in the Image Analysis Hub (with me), but is made to support several institutes including Pasteur, the Institut Jacques Monod, … I give all the details in the application below. You can also download the flyer here:

dl.pasteur.fr/fop/sDtotzGh...

Jean-Yves Tinevez @jytinevez.bsky.social · 3d

Seul exemple que je connaisse :

en.wikipedia.org/wiki/Fast_in...

Fast inverse square root - Wikipedia

en.wikipedia.org

Reposted by Jean-Yves Tinévez

CNRS @cnrs.fr · 3d

#ExpertsCNRS 🔎 Journalistes, en lien avec le #NobelPrize de physique, le bureau de presse du @cnrs.fr vous propose des scientifiques pouvant vous éclairer sur les travaux des lauréats.
Si vous êtes intéressés :
📞 📩 cnrs.fr/fr/contacts

Reposted by Jean-Yves Tinévez

CNRS @cnrs.fr · 4d

#ExpertsCNRS 🔎 Journalistes, en lien avec le #NobelPrize de médecine, le bureau de presse du @cnrs.fr vous propose des scientifiques pouvant vous éclairer sur les travaux des lauréats.

Si vous êtes intéressés :
📞📩 cnrs.fr/fr/contacts

Reposted by Mart Krupovìč, Jean-Yves Tinévez

Thibaut Brunet @thibautbrunet.bsky.social · 5d

Latest from ours: www.cell.com/cell-reports...

This is two stories in one: a case study/cautionary tale on developing genetic tools in new organisms, and the first hint at a gene regulatory network for choanoflagellate multicellular development (which turn out to involve a Hippo/YAP/ECM loop!) A 🧵

Jean-Yves Tinevez @jytinevez.bsky.social · 6d

What one should I watch to have a meaningful ending?

Reposted by Jean-Yves Tinévez

GdR ImaBio @gdrimabio.bsky.social · 6d

🔬For 22 years, we have been organizing #Mifobio "Functional Microscopy for Biology" the @cnrs.fr thematic school.

🎓 Courses, Seminars, Round Tables, Workshops. The overall theme concerns #biological_imaging in its most interdisciplinary aspects.

👉 Program: imabio-cnrs.fr

#GDRImaBio #Mifobio2025

Reposted by Jean-Yves Tinévez

BioImaging North America @bioimagingna.bsky.social · 6d

#HappyFluorescenceFriday!

#microscopycommunity- Join us for Image Analysis Journeys from Academia to Industry featuring Caroline Miller, Kevin Murphy, Jian Wei Tay, Erick Ratamero, Sara McArdle, and Sripad Ram. Nov 6, 1:00 to 2:30 pm ET

More info & registration: buff.ly/eFUU6up

Reposted by Jean-Yves Tinévez, Olivier Sandre

Peter O'Toole @yorkbioimaging.bsky.social · 6d

Happy #FluorescenceFriday. Christophe Leterrier⭐in #TheMicroscopists and reflects on the
make-or-break moment at the end of his postdoc
when he came close to leaving academia before securing his CNRS position
and how these experiences shape the way he mentors others.
Stream: bit.ly/microscopist...

The Microscopists | Christophe Leterrier (CNRS & Aix-Marseille Université)

This time on The Microscopists, we're joined by Christophe Leterrier, team leader at NeuroCyto in Marseille and director of a Nikon Center of Excellence for super-resolution microscopy.Christophe r...

Jean-Yves Tinevez @jytinevez.bsky.social · 7d

Do you want to work with Michalis and us on a fun and ambitious LSFM, tracking and gamification project?
Apply!!

Michalis Averof @michalis-averof.bsky.social · 7d

Cool collaborations on light sheet microscopy @huiskenlab.bsky.social, cellular barcoding @mgrillo.bsky.social, AI-based cell tracking @jytinevez.bsky.social, and citizen science through video game for cell tracking @rebelpixel.fr

see www.averof-lab.org/pages/tracman

3/3

Reposted by Jean-Yves Tinévez

Michalis Averof @michalis-averof.bsky.social · 7d

Cool collaborations on light sheet microscopy @huiskenlab.bsky.social, cellular barcoding @mgrillo.bsky.social, AI-based cell tracking @jytinevez.bsky.social, and citizen science through video game for cell tracking @rebelpixel.fr

see www.averof-lab.org/pages/tracman

3/3

Reposted by Jean-Yves Tinévez

Michalis Averof @michalis-averof.bsky.social · 7d

Postdoc will:
* Βe trained in live imaging & transgenic approach
* Generate fluorescent markers for sensory organ cell types (neurons, setae, support cells & glia)
* Develop recombinase-based cell barcoding
* Use barcoding, live imaging & cell tracking to identify regenerative progenitors

2/3

Reposted by Jean-Yves Tinévez

eurobioimaging.bsky.social @eurobioimaging.bsky.social · 7d

Great to see Node staff, #i4A training grantee hernanmn.bsky.social & others at the EMBO "Advanced Methods in BioImage Analysis" course! @ahklemm.bsky.social @perrinegil.bsky.social @jytinevez.bsky.social @france-bioimaging.bsky.social @iemcas.bsky.social
More🔽
www.eurobioimaging.eu/news/success...

Jean-Yves Tinevez @jytinevez.bsky.social · 8d

Improving the AiryScan detector?

Reposted by Jean-Yves Tinévez

Ignacio Arganda-Carreras @iarganda.bsky.social · 10d

📣 We’re hiring, please RT! Fully funded 4-year PhD position in our CVPD group at @informatikaehu.bsky.social!

Research at the intersection of AI, deep learning & bioimage analysis. 🧠🔬

📅 Applications open Oct 6 (deadline: ~Oct 27)
📍 San Sebastian, Spain.
👉 cvpd.github.io/post/2025-09...

📢 Open 4-year PhD Position in Deep Learning for Bioimage Analysis! | CVPD Research group

The Computer Vision and Pattern Discovery (CVPD) group at the University of the Basque Country (UPV/EHU) is offering a fully funded 4-year PhD position within the recently awarded project TOSBI: Towar...

Reposted by Jean-Yves Tinévez

ScaDS.AI Dresden/Leipzig @scadsai.bsky.social · 10d

@scadsai.bsky.social training coordinator @haesleinhuepf.bsky.social provided insights into his professional career in the podcast series “The Microscopists.”
If you want to know why he'll never ask biologists for better images again, click here:
🍍 themicroscopists.bitesizebio.com/episodes/rob...

Reposted by Jean-Yves Tinévez

Institut Pasteur Education @pasteuredu.bsky.social · 10d

Soutenez l'initiative pour lutter contre la précarité des jeunes scientifiques

Objectif : proposer chaque année 95 logements accessibles à des jeunes chercheur.se.s.

RDV ici ➡️ faireundon.pasteur.fr
➡️ À l’étape Affectation, choisissez Autre et indiquez :
CENTRE ENSEIGNEMENT – Un toit pour étudier

Reposted by Jean-Yves Tinévez

Ariane Abrieu @arianeabrieu.bsky.social · 15d

La vie est belle! vous attend à la maison des relations internationales à Montpellier!

Une initiative des @addictauxsciences.bsky.social qui présente les images de Montpellier Ressources Imagerie dans ce cadre exceptionnel 🤩

Festival What a trip!
Jeu-Sam 10-18h

@eurobioimaging.bsky.social

Reposted by Jean-Yves Tinévez

kuba sędziński @kuba-sedzinski.bsky.social · 18d

🧵1/14 Preprint thread! Can we predict a cell’s fate based on its dynamics? 🔮 Our new study unveils a framework for watching development unfold in real-time, revealing how a cell's shape and movement encode info about its future fate. 🔬📄 Preprint: tinyurl.com/4shf8v4x

Reposted by Jean-Yves Tinévez

Erick Ratamero @erickratamero.com · 19d

Had an amazing time helping out at the "Advanced methods in bioimage analysis" @embo.org course this week. It was great seeing a bunch of friends and meeting a group of students highly motivated to do better science and eager to learn. Genuinely grateful to @tischi.bsky.social and the org team!

Reposted by Jean-Yves Tinévez

Institut Pasteur Education @pasteuredu.bsky.social · 20d

⌛1 month left to apply – 2025 PPU call for candidates

We invite you to discover 4 Develpmental & Stem Cell Biology projects and 3 Immunology projects👇

🕰️Application deadline: October 20, 2025
📍Program starts: October 2026

Discover all the projects (50+) & apply: www.pasteur.fr/en/education...

Reposted by Jean-Yves Tinévez

Peter O'Toole @yorkbioimaging.bsky.social · 21d

Oh yes-the one and only Robert Haase @haesleinhuepf.bsky.social
From #GrandTheftAuto to the impact AI is having on #bioimaging.
+the challenges of creating AI courses for bioimage analysis, & his unique perspective as a programmer-turned-biologist.
Stream- bit.ly/microscopist...
@globias.bsky.social

The Microscopists | Robert Haase (Leipzig University)

We're thrilled to bring you the latest episode of The Microscopists, this time featuring Robert Haase, Lecturer and Training Coordinator at Leipzig University. In this episode, Robert chats about t...

Jean-Yves Tinevez @jytinevez.bsky.social · 21d

Some analysts understood all about life

Reposted by Jean-Yves Tinévez

Ignacio Arganda-Carreras @iarganda.bsky.social · 21d

The rest of the afternoon is spent with the students working on their own data with all Software representatives and instructors, of course 🤗

They work that hard, not posing at all! 😆

@jytinevez.bsky.social @perrinegil.bsky.social keep all the attention 😎