Mark
mkeller7.bsky.social
Mark
@mkeller7.bsky.social
Researcher in bioinformatics working on single-cell data visualization

https://markk.co
Reposted by Mark
It’s -9 degrees. Downtown Minneapolis is packed for the anti-ICE rally and the crowd keeps growing
January 23, 2026 at 8:16 PM
Reposted by Mark
Any one of these daily atrocities should result in a full congressional investigation and a disbanding of the agency. The fact that it’s all just shrugged off by those with the power to stop it is a national disgrace.
ICE ended up returning the man, Saly, after realizing he’s a fucking US citizen with no criminal record, per his sister-in-law. These fucking animals.
January 19, 2026 at 11:58 AM
Reposted by Mark
Wrote a summary of a great keynote by @zey.bsky.social at NeurIPS, arguing that we’re having the wrong nightmares about AI: not AGI or superhuman benchmarks, but good-enough genAI at scale threatens "load bearing frictions" society relies on to signal effort, authenticity, sincerity, credibility.
Zeynep Tufecki on having the wrong nightmares about generative AI
I was writing a blog post where I was going to reference Zeynep Tufecki’s 2025 NeurIPS keynote, and realized there isn’t a solid synopsis online.
open.substack.com
January 9, 2026 at 4:42 PM
Reposted by Mark
The Congressional Progressive Caucus, a group of nearly 100 House Democrats, will announce later today that it's formally endorsing legislation to strip $175 billion from ICE and put it toward affordable housing. www.huffpost.com/entry/doj-fe...
Progressive Caucus Backs Bill To Redirect ICE Money To Affordable Housing
www.huffpost.com
January 14, 2026 at 8:00 PM
Reposted by Mark
Today at 34 & Park in Minneapolis, a woman tried to drive down the street where a protest had broken out in front of a home ICE was raiding, saying she had a doctor apt to get to. ICE agents busted out her windows, cut off her seatbelt, and pulled her out before arresting her.
January 13, 2026 at 6:56 PM
Reposted by Mark
A video of ICE agents conducting door-to-door searches today in Minneapolis

The homeowner requests a warrant repeatedly, is told they don't require one, then is told they're getting it, then the agents storm in anyway

They also point a taser at her to try and disrupt filming
January 12, 2026 at 1:42 AM
Reposted by Mark
🔬 pertpy: a unified, scalable framework for single-cell perturbation analysis, now out in Nature Methods

Designed for modern perturbation data - CRISPR, drug screens, patient treatments - scaling to millions of cells and 1000s of conditions.
👉 www.nature.com/articles/s41...
January 8, 2026 at 4:30 PM
Reposted by Mark
A new paper from Stanford adds further, incontrovertible evidence that LLMs memorize training data.

The authors showed that copyrighted works can be extracted from every LLM they tried: GPT-4.1, Gemini 2.5 Pro, Grok 3, and Claude 3.7 Sonnet.

🧵 1/3

arxiv.org/pdf/2601.026...
January 8, 2026 at 9:53 AM
Reposted by Mark
Too lazy for 2 clicks, here you go: tonsky.me/blog/tahoe-i...
It’s hard to justify Tahoe icons
Looking at the first principles of icon design—and how Apple failed to apply all of them in macOS Tahoe
tonsky.me
January 6, 2026 at 5:44 PM
Reposted by Mark
🎉 New year, NEW PREPRINT!

Bacteria exhibit astonishing genetic diversity, but where do new genes come from?

My best friend Arya Kaul (/labmate in the @baym lab) investigates how advantageous deletions can spawn new genes - "deletion-born fusions." 🧵:
Novel genes arise from genomic deletions across the bacterial tree of life https://www.biorxiv.org/content/10.64898/2026.01.05.697752v1
January 6, 2026 at 4:09 PM
Reposted by Mark
7/ Here's the bottom line: This is an unprecedented shift that risks weakening protection against preventable diseases at a time when outbreaks are rising and children are already being hospitalized. Vaccines don’t work without strong supporting systems...and the U.S. doesn’t have Denmark’s.
January 5, 2026 at 8:52 PM
Reposted by Mark
Hello moths,

The harvest has arrived: anisota.net/harvest

It's like Spotify Wrapped, but for Bluesky and the ATmosphere. 🌾

See your most-used words, discover who you interact with most, explore your posting patterns, and find all sorts of fun insights.
Anisota's Annual Bluesky Harvest 2025
A recap of your year on Bluesky. Discover patterns, connections, and insights from your journey in the ATmosphere.
anisota.net
November 27, 2025 at 5:51 PM
Reposted by Mark
If you are a resident of California, the state now has a portal where you can demand deletion of your personal data from 500+ registered data brokers with a single request form, for free.

consumer.drop.privacy.ca.gov
consumer.drop.privacy.ca.gov
January 2, 2026 at 2:26 AM
Reposted by Mark
New record year for renewable electricity in Britain - thanks especially to strong solar output.

Read our analysis of 2025 here www.bbc.co.uk/news/article...
January 2, 2026 at 12:23 PM
This exists 😁
December 26, 2025 at 6:08 PM
App idea: rover, but for sourdough starters and leivito madre. it will be called doughver
December 17, 2025 at 1:10 PM
Reposted by Mark
See 👇 our new manuscript introducing SpaCEy, an explainable method for predicting clinical outcomes from spatial omics data 🧬

📄 Paper: www.biorxiv.org/content/10.6...
💻 Code repo: github.com/saezlab/SpaCEy
December 17, 2025 at 8:14 AM
Reposted by Mark
The structure of the bacterial genotoxin colibactin bound to DNA shows how it might contribute to cancer risk.

Learn more in a new #SciencePerspective: https://scim.ag/4iJPFVS
Molecular basis of DNA cross-linking by bacteria
The structure of the bacterial genotoxin colibactin bound to DNA shows how it might contribute to cancer risk
scim.ag
December 14, 2025 at 6:18 PM
Reposted by Mark
GLASHEEN: Antifa is our primary concern right now. That's the most immediate violent threat we're facing

BENNIE THOMPSON: Where is antifa headquartered?

GLASHEEN: ... ... ... we are building out the infrastructure right now

THOMPSON: What does that mean?
December 11, 2025 at 3:51 PM
Reposted by Mark
MAGAZINER: How many veterans have you deported?

NOEM: We haven't deported veterans

MAGAZINER: We are now joined on Zoom by a combat veteran you deported to Korea
December 11, 2025 at 4:22 PM
Reposted by Mark
Massive single-cell study by Kanai et al (www.medrxiv.org/content/10.1...):
- Once statistical power is high, constrained genes have more (though weaker) eQTLs.
- Chromatin-QTLs near constrained genes have "normal" effect sizes, colocalize more with disease, but exhibit attenuated peak-gene effects.
November 30, 2025 at 5:06 PM