PennLINC
@pennlinc.bsky.social
The Lifespan Informatics and Neuroimaging Center at the University of Pennylvannia, headed by @ted-satterthwaite.bsky.social. This account is mostly for announcing new papers, lab members, etc.
Pinned
PennLINC
@pennlinc.bsky.social
· Nov 18
Here's a starter pack with the great folks from the PennLINC team!
Reposted by PennLINC
BEYOND delighted to see two brilliant #PennLINC alumni -- @valeriejsydnor.bsky.social + @lindenmp.bsky.social -- named by The Transmitter as "Rising Stars of Neuroscience 2025". Super well deserved -- CONGRATS!!!
www.thetransmitter.org/early-career...
www.thetransmitter.org/early-career...
The Transmitter’s Rising Stars of Neuroscience 2025
We recognize the outstanding achievements of 25 neuroscientists who stand to shape the field for years to come.
www.thetransmitter.org
November 16, 2025 at 3:21 PM
BEYOND delighted to see two brilliant #PennLINC alumni -- @valeriejsydnor.bsky.social + @lindenmp.bsky.social -- named by The Transmitter as "Rising Stars of Neuroscience 2025". Super well deserved -- CONGRATS!!!
www.thetransmitter.org/early-career...
www.thetransmitter.org/early-career...
Reposted by PennLINC
🧠I am excited to announce that our manuscript introducing a new data resource – PennLEAD (Penn Longitudinal Executive functioning in Adolescent Development) – is now available on bioRxiv. Below are some details highlighting our data resource🧵funded by NIMH R01MH113550
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
November 12, 2025 at 9:53 PM
🧠I am excited to announce that our manuscript introducing a new data resource – PennLEAD (Penn Longitudinal Executive functioning in Adolescent Development) – is now available on bioRxiv. Below are some details highlighting our data resource🧵funded by NIMH R01MH113550
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
Reposted by PennLINC
An Open, Fully-processed, Longitudinal Data Resource to Study Brain Development and Transdiagnostic Executive Function https://www.biorxiv.org/content/10.1101/2025.11.10.687633v1
November 12, 2025 at 8:15 PM
An Open, Fully-processed, Longitudinal Data Resource to Study Brain Development and Transdiagnostic Executive Function https://www.biorxiv.org/content/10.1101/2025.11.10.687633v1
Reposted by PennLINC
Happy to share our review "Investigating hierarchical critical periods in human neurodevelopment” in @npp-journal.bsky.social! We examine neurobiological, environmental & behavioral evidence for human critical periods in sensory and association cortex +discuss new research directions rdcu.be/eMkVU 🧵
November 11, 2025 at 8:01 PM
Happy to share our review "Investigating hierarchical critical periods in human neurodevelopment” in @npp-journal.bsky.social! We examine neurobiological, environmental & behavioral evidence for human critical periods in sensory and association cortex +discuss new research directions rdcu.be/eMkVU 🧵
Reposted by PennLINC
Truly heroic work by the stellar @cieslakmatt.bsky.social + the HBCD dMRI working group team. Refactored QSIPrep + QSIRecon is the result of nearly 3y of concerted development + testing. It will be a total workhorse for HBCD -- and almost any other dMRI scan. Check it out for your data!!!
After years of development and testing, we are happy to present our work in "Diffusion MRI Processing in the HEALthy Brain and Child Development Study: Innovations and Applications"! www.biorxiv.org/content/10.1.... A thread:
Diffusion MRI Processing in the HEALthy Brain and Child Development Study: Innovations and Applications
The landmark ongoing HEALthy Brain and Cognitive Development (HBCD) study will longitudinally chart brain development in a large sample (projected n=7,200) of infants through age 10 years with multimo...
www.biorxiv.org
November 12, 2025 at 2:18 PM
Truly heroic work by the stellar @cieslakmatt.bsky.social + the HBCD dMRI working group team. Refactored QSIPrep + QSIRecon is the result of nearly 3y of concerted development + testing. It will be a total workhorse for HBCD -- and almost any other dMRI scan. Check it out for your data!!!
Reposted by PennLINC
QSIPrep and QSIRecon are usable beyond HBCD. Code, containers, and documentation are openly available. github.com/PennLINC/qsi..., github.com/PennLINC/qsi...
GitHub - PennLINC/qsiprep: Preprocessing of diffusion MRI
Preprocessing of diffusion MRI. Contribute to PennLINC/qsiprep development by creating an account on GitHub.
github.com
November 11, 2025 at 10:03 PM
QSIPrep and QSIRecon are usable beyond HBCD. Code, containers, and documentation are openly available. github.com/PennLINC/qsi..., github.com/PennLINC/qsi...
Reposted by PennLINC
We made numerous updates to the QSIPrep and QSIRecon software packages to better perform on HBCD’s infant/pediatric diffusion MRI. New preprocessing includes partial-Fourier Gibbs unringing, MP-PCA, 2-stage susceptibility distortion correction, SynthStrip/Synthseg and MNIInfant atlases.
November 11, 2025 at 10:03 PM
We made numerous updates to the QSIPrep and QSIRecon software packages to better perform on HBCD’s infant/pediatric diffusion MRI. New preprocessing includes partial-Fourier Gibbs unringing, MP-PCA, 2-stage susceptibility distortion correction, SynthStrip/Synthseg and MNIInfant atlases.
Reposted by PennLINC
After years of development and testing, we are happy to present our work in "Diffusion MRI Processing in the HEALthy Brain and Child Development Study: Innovations and Applications"! www.biorxiv.org/content/10.1.... A thread:
Diffusion MRI Processing in the HEALthy Brain and Child Development Study: Innovations and Applications
The landmark ongoing HEALthy Brain and Cognitive Development (HBCD) study will longitudinally chart brain development in a large sample (projected n=7,200) of infants through age 10 years with multimo...
www.biorxiv.org
November 11, 2025 at 10:03 PM
After years of development and testing, we are happy to present our work in "Diffusion MRI Processing in the HEALthy Brain and Child Development Study: Innovations and Applications"! www.biorxiv.org/content/10.1.... A thread:
Reposted by PennLINC
🚨 New science alert! Our cross-species study, now in Nature Neuroscience, demonstrates psychedelics distort how we should interpret functional brain imaging.
👇🧵
nature.com/articles/s41...
#Neuroscience #Psychedelics #BrainImaging
👇🧵
nature.com/articles/s41...
#Neuroscience #Psychedelics #BrainImaging
Psychedelic 5-HT2A receptor agonism alters neurovascular coupling and differentially affects neuronal and hemodynamic measures of brain function
Nature Neuroscience - Padawer-Curry et al. show that the hallucinogenic 5-HT2A receptor agonist DOI alters neurovascular coupling in mice, with implications for the interpretation of human fMRI...
nature.com
October 15, 2025 at 8:18 PM
🚨 New science alert! Our cross-species study, now in Nature Neuroscience, demonstrates psychedelics distort how we should interpret functional brain imaging.
👇🧵
nature.com/articles/s41...
#Neuroscience #Psychedelics #BrainImaging
👇🧵
nature.com/articles/s41...
#Neuroscience #Psychedelics #BrainImaging
Reposted by PennLINC
We are pleased to announce that BIDS Extension Proposal 20 - Eye Tracking is open for community review!
github.com/bids-standar...
The review period is open from September 29 - October 10.
#bids #neuroimaging #eyetracking
github.com/bids-standar...
The review period is open from September 29 - October 10.
#bids #neuroimaging #eyetracking
Community Review: BEP020 - Eye Tracking · bids-standard bids-specification · Discussion #2218
We are pleased to announce the community review period for BIDS Extension Proposal (BEP) 020! BEP020 extends the BIDS standard to formally specify eye-tracking recordings, which has previously been...
github.com
September 29, 2025 at 2:04 PM
We are pleased to announce that BIDS Extension Proposal 20 - Eye Tracking is open for community review!
github.com/bids-standar...
The review period is open from September 29 - October 10.
#bids #neuroimaging #eyetracking
github.com/bids-standar...
The review period is open from September 29 - October 10.
#bids #neuroimaging #eyetracking
Reposted by PennLINC
We are pleased to announce that BIDS Extension Proposal 42 - Electromyogrpahy is open for community review!
github.com/bids-standar...
The review period is open from September 29 - October 10.
#bids #neuroimaging #electromyography #emg
github.com/bids-standar...
The review period is open from September 29 - October 10.
#bids #neuroimaging #electromyography #emg
Community Review: BEP042 - Electromyography (EMG) · bids-standard bids-specification · Discussion #2219
We are pleased to announce the community review period for BIDS Extension Proposal (BEP) 042! BEP042 extends the BIDS standard to include electromyography recordings. The draft specification may be...
github.com
September 29, 2025 at 2:05 PM
We are pleased to announce that BIDS Extension Proposal 42 - Electromyogrpahy is open for community review!
github.com/bids-standar...
The review period is open from September 29 - October 10.
#bids #neuroimaging #electromyography #emg
github.com/bids-standar...
The review period is open from September 29 - October 10.
#bids #neuroimaging #electromyography #emg
Reposted by PennLINC
How does the human brain coordinate hierarchical cortical development? Our work in Nature Neuroscience identifies a role for thalamocortical structural connectivity in the expression of hierarchical periods of cortical plasticity & environmental receptivity in youth 🧵 www.nature.com/articles/s41...
July 8, 2025 at 12:00 AM
How does the human brain coordinate hierarchical cortical development? Our work in Nature Neuroscience identifies a role for thalamocortical structural connectivity in the expression of hierarchical periods of cortical plasticity & environmental receptivity in youth 🧵 www.nature.com/articles/s41...
Reposted by PennLINC
Check out this stellar work from the one-and-only @valeriejsydnor.bsky.social w/ team at @pennlinc.bsky.social + (many!) friends -- providing new evidence that thalamo-cortical connectivity coordinates the hierarchical progression of cortical plasticity in development. Out in @natneuro.nature.com.
How does the human brain coordinate hierarchical cortical development? Our work in Nature Neuroscience identifies a role for thalamocortical structural connectivity in the expression of hierarchical periods of cortical plasticity & environmental receptivity in youth 🧵 www.nature.com/articles/s41...
July 8, 2025 at 11:30 AM
Check out this stellar work from the one-and-only @valeriejsydnor.bsky.social w/ team at @pennlinc.bsky.social + (many!) friends -- providing new evidence that thalamo-cortical connectivity coordinates the hierarchical progression of cortical plasticity in development. Out in @natneuro.nature.com.
Reposted by PennLINC
Amelie Rauland (all star via IRTG student w/ @sbe.bsky.social ) will be presenting "Benchmarking Reconstruction Methods for Bundle Segmentation in Single-Shell dMRI" on Friday and Saturday, Poster #1283
June 25, 2025 at 7:24 AM
Amelie Rauland (all star via IRTG student w/ @sbe.bsky.social ) will be presenting "Benchmarking Reconstruction Methods for Bundle Segmentation in Single-Shell dMRI" on Friday and Saturday, Poster #1283
Reposted by PennLINC
@bencephalon.bsky.social from @aarona-b.bsky.social 's lab will be presenting "Integrating clinical and research imaging to uncover neuroanatomic deviations in 22q11.2 deletions" Wed, June 25, 13:15 -15:15 & Thurs, June 26, 13:45 -15:45; Poster #697
June 25, 2025 at 5:26 AM
@bencephalon.bsky.social from @aarona-b.bsky.social 's lab will be presenting "Integrating clinical and research imaging to uncover neuroanatomic deviations in 22q11.2 deletions" Wed, June 25, 13:15 -15:15 & Thurs, June 26, 13:45 -15:45; Poster #697
Reposted by PennLINC
@kevin-y-sun.bsky.social will be presenting his work on "Copy Number Variant Risk Scores Are Associated with Personalized Functional Brain Network Topography" Wed, June 25, 13:15 - 15:15 & Thus, June 26, 13:45 - 15:45
June 25, 2025 at 12:50 AM
@kevin-y-sun.bsky.social will be presenting his work on "Copy Number Variant Risk Scores Are Associated with Personalized Functional Brain Network Topography" Wed, June 25, 13:15 - 15:15 & Thus, June 26, 13:45 - 15:45
Reposted by PennLINC
@audreycluo.bsky.social will be presenting her fab work on "Two Axes of White Matter Development" on Wed, June 25, 13:15 -15:15 & Thurs, June 26, 13:45 -15:45; Poster #1010.
June 25, 2025 at 12:49 AM
@audreycluo.bsky.social will be presenting her fab work on "Two Axes of White Matter Development" on Wed, June 25, 13:15 -15:15 & Thurs, June 26, 13:45 -15:45; Poster #1010.
Reposted by PennLINC
Want more RBC? Come chat with me at the RBC poster Friday, Jun 27 & Saturday June 28: 13:45 – 15:45 PM; Poster #1816.
June 25, 2025 at 12:48 AM
Want more RBC? Come chat with me at the RBC poster Friday, Jun 27 & Saturday June 28: 13:45 – 15:45 PM; Poster #1816.
Reposted by PennLINC
I will provide a (poor) substitute for @goliashf.bsky.social and discuss Reproducible Brain Charts as part of the "OSR Table Talk on Recommended Practices in Open Science" Friday, June 27, from 8–9 AM in Exhibition Hall 1
June 25, 2025 at 12:46 AM
I will provide a (poor) substitute for @goliashf.bsky.social and discuss Reproducible Brain Charts as part of the "OSR Table Talk on Recommended Practices in Open Science" Friday, June 27, from 8–9 AM in Exhibition Hall 1
Reposted by PennLINC
@goliashf.bsky.social is ALSO presenting "Systematic dynamical profiling to discover and manipulate the dynamical regime of the primate brain" Thursday, Jun 26: 9:00 AM – 10:15 AM during the computational dynamics symposium in Room M2.
June 25, 2025 at 12:44 AM
@goliashf.bsky.social is ALSO presenting "Systematic dynamical profiling to discover and manipulate the dynamical regime of the primate brain" Thursday, Jun 26: 9:00 AM – 10:15 AM during the computational dynamics symposium in Room M2.
Reposted by PennLINC
@goliashf.bsky.social is presenting (via video, 🥲) "Reproducible Brain Charts: An Open Data Resource for Mapping the Developing Brain and Mental Health" on Friday, Jun 27: 11:30 AM – 12:45 PM. This talk is part the Neuroinformatics and Data Sharing session in Room M3 (Mezzanine Level).
June 25, 2025 at 12:41 AM
@goliashf.bsky.social is presenting (via video, 🥲) "Reproducible Brain Charts: An Open Data Resource for Mapping the Developing Brain and Mental Health" on Friday, Jun 27: 11:30 AM – 12:45 PM. This talk is part the Neuroinformatics and Data Sharing session in Room M3 (Mezzanine Level).
Reposted by PennLINC
@stevenmeisler.com is presenting "A quality-rated, analysis-ready release of 26,174 dMRI sessions from the ABCD Study" Friday / Saturday 1810. Wooo!!!!
June 25, 2025 at 12:39 AM
@stevenmeisler.com is presenting "A quality-rated, analysis-ready release of 26,174 dMRI sessions from the ABCD Study" Friday / Saturday 1810. Wooo!!!!
Reposted by PennLINC
#OHBM2025 is here and the champs from @pennlinc.bsky.social have brought their freshest work express from Philly to Brisbane. Thread below . . .please reach out + come say hi -- always looking to talk science + make new friends!!!
a cartoon of snoopy dancing with the words oh yeah written above him
ALT: a cartoon of snoopy dancing with the words oh yeah written above him
media.tenor.com
June 25, 2025 at 12:36 AM
#OHBM2025 is here and the champs from @pennlinc.bsky.social have brought their freshest work express from Philly to Brisbane. Thread below . . .please reach out + come say hi -- always looking to talk science + make new friends!!!
Reposted by PennLINC
Check out this new open data resource led by the amazing @juliettebrook.bsky.social and @tsalo.bsky.social with @pennlinc.bsky.social and stellar collabs. Imaging data includes multi-echo fMRI, compressed-sensing dMRI + advanced ASL-- both unprocessed + fully-processed imaging in BIDS!
Dreaming of a dataset that tracks mood, sleep & activity to better understand affective instability (AI)…AND paired with advanced MRI? 🤯
Check out our new bioRxiv preprint for a 13–23 y/o community sample (n=10 and growing!) with multi-echo fMRI, EMA & actigraphy: www.biorxiv.org/content/10.1...
Check out our new bioRxiv preprint for a 13–23 y/o community sample (n=10 and growing!) with multi-echo fMRI, EMA & actigraphy: www.biorxiv.org/content/10.1...
May 6, 2025 at 3:38 PM
Check out this new open data resource led by the amazing @juliettebrook.bsky.social and @tsalo.bsky.social with @pennlinc.bsky.social and stellar collabs. Imaging data includes multi-echo fMRI, compressed-sensing dMRI + advanced ASL-- both unprocessed + fully-processed imaging in BIDS!
Reposted by PennLINC
Dreaming of a dataset that tracks mood, sleep & activity to better understand affective instability (AI)…AND paired with advanced MRI? 🤯
Check out our new bioRxiv preprint for a 13–23 y/o community sample (n=10 and growing!) with multi-echo fMRI, EMA & actigraphy: www.biorxiv.org/content/10.1...
Check out our new bioRxiv preprint for a 13–23 y/o community sample (n=10 and growing!) with multi-echo fMRI, EMA & actigraphy: www.biorxiv.org/content/10.1...
May 6, 2025 at 3:32 PM
Dreaming of a dataset that tracks mood, sleep & activity to better understand affective instability (AI)…AND paired with advanced MRI? 🤯
Check out our new bioRxiv preprint for a 13–23 y/o community sample (n=10 and growing!) with multi-echo fMRI, EMA & actigraphy: www.biorxiv.org/content/10.1...
Check out our new bioRxiv preprint for a 13–23 y/o community sample (n=10 and growing!) with multi-echo fMRI, EMA & actigraphy: www.biorxiv.org/content/10.1...