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BIDS (Brain Imaging Data Structure) @bidsstandard.bsky.social · 9d

We are pleased to announce that BIDS Extension Proposal 20 - Eye Tracking is open for community review!

github.com/bids-standar...

The review period is open from September 29 - October 10.
#bids #neuroimaging #eyetracking

Community Review: BEP020 - Eye Tracking · bids-standard bids-specification · Discussion #2218

We are pleased to announce the community review period for BIDS Extension Proposal (BEP) 020! BEP020 extends the BIDS standard to formally specify eye-tracking recordings, which has previously been...

github.com

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BIDS (Brain Imaging Data Structure) @bidsstandard.bsky.social · 9d

We are pleased to announce that BIDS Extension Proposal 42 - Electromyogrpahy is open for community review!

github.com/bids-standar...

The review period is open from September 29 - October 10.
#bids #neuroimaging #electromyography #emg

Community Review: BEP042 - Electromyography (EMG) · bids-standard bids-specification · Discussion #2219

We are pleased to announce the community review period for BIDS Extension Proposal (BEP) 042! BEP042 extends the BIDS standard to include electromyography recordings. The draft specification may be...

github.com

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Valerie Jill Sydnor @valeriejsydnor.bsky.social · Jul 8

How does the human brain coordinate hierarchical cortical development? Our work in Nature Neuroscience identifies a role for thalamocortical structural connectivity in the expression of hierarchical periods of cortical plasticity & environmental receptivity in youth 🧵 www.nature.com/articles/s41...

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Ted Satterthwaite @ted-satterthwaite.bsky.social · Jul 8

Check out this stellar work from the one-and-only @valeriejsydnor.bsky.social w/ team at @pennlinc.bsky.social + (many!) friends -- providing new evidence that thalamo-cortical connectivity coordinates the hierarchical progression of cortical plasticity in development. Out in @natneuro.nature.com.

Valerie Jill Sydnor @valeriejsydnor.bsky.social · Jul 8

How does the human brain coordinate hierarchical cortical development? Our work in Nature Neuroscience identifies a role for thalamocortical structural connectivity in the expression of hierarchical periods of cortical plasticity & environmental receptivity in youth 🧵 www.nature.com/articles/s41...

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Ted Satterthwaite @ted-satterthwaite.bsky.social · Jun 25

Amelie Rauland (all star via IRTG student w/ @sbe.bsky.social ) will be presenting "Benchmarking Reconstruction Methods for Bundle Segmentation in Single-Shell dMRI" on Friday and Saturday, Poster #1283

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Ted Satterthwaite @ted-satterthwaite.bsky.social · Jun 25

@bencephalon.bsky.social from @aarona-b.bsky.social 's lab will be presenting "Integrating clinical and research imaging to uncover neuroanatomic deviations in 22q11.2 deletions" Wed, June 25, 13:15 -15:15 & Thurs, June 26, 13:45 -15:45; Poster #697

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Ted Satterthwaite @ted-satterthwaite.bsky.social · Jun 25

@kevin-y-sun.bsky.social‬ will be presenting his work on "Copy Number Variant Risk Scores Are Associated with Personalized Functional Brain Network Topography" Wed, June 25, 13:15 - 15:15 & Thus, June 26, 13:45 - 15:45

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Ted Satterthwaite @ted-satterthwaite.bsky.social · Jun 25

@audreycluo.bsky.social will be presenting her fab work on "Two Axes of White Matter Development" on Wed, June 25, 13:15 -15:15 & Thurs, June 26, 13:45 -15:45; Poster #1010.

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Ted Satterthwaite @ted-satterthwaite.bsky.social · Jun 25

Want more RBC? Come chat with me at the RBC poster Friday, Jun 27 & Saturday June 28: 13:45 – 15:45 PM; Poster #1816.

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Ted Satterthwaite @ted-satterthwaite.bsky.social · Jun 25

I will provide a (poor) substitute for @goliashf.bsky.social and discuss Reproducible Brain Charts as part of the "OSR Table Talk on Recommended Practices in Open Science" Friday, June 27, from 8–9 AM in Exhibition Hall 1

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Ted Satterthwaite @ted-satterthwaite.bsky.social · Jun 25

@goliashf.bsky.social is ALSO presenting "Systematic dynamical profiling to discover and manipulate the dynamical regime of the primate brain" Thursday, Jun 26: 9:00 AM – 10:15 AM during the computational dynamics symposium in Room M2.

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Ted Satterthwaite @ted-satterthwaite.bsky.social · Jun 25

@goliashf.bsky.social is presenting (via video, 🥲) "Reproducible Brain Charts: An Open Data Resource for Mapping the Developing Brain and Mental Health" on Friday, Jun 27: 11:30 AM – 12:45 PM. This talk is part the Neuroinformatics and Data Sharing session in Room M3 (Mezzanine Level).

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Ted Satterthwaite @ted-satterthwaite.bsky.social · Jun 25

@stevenmeisler.com is presenting "A quality-rated, analysis-ready release of 26,174 dMRI sessions from the ABCD Study" Friday / Saturday 1810. Wooo!!!!

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Ted Satterthwaite @ted-satterthwaite.bsky.social · Jun 25

#OHBM2025 is here and the champs from @pennlinc.bsky.social have brought their freshest work express from Philly to Brisbane. Thread below . . .please reach out + come say hi -- always looking to talk science + make new friends!!!

a cartoon of snoopy dancing with the words oh yeah written above him

ALT: a cartoon of snoopy dancing with the words oh yeah written above him

media.tenor.com

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Ted Satterthwaite @ted-satterthwaite.bsky.social · May 6

Check out this new open data resource led by the amazing @juliettebrook.bsky.social and @tsalo.bsky.social with @pennlinc.bsky.social and stellar collabs. Imaging data includes multi-echo fMRI, compressed-sensing dMRI + advanced ASL-- both unprocessed + fully-processed imaging in BIDS!

Juliette Brook @juliettebrook.bsky.social · May 6

Dreaming of a dataset that tracks mood, sleep & activity to better understand affective instability (AI)…AND paired with advanced MRI? 🤯
Check out our new bioRxiv preprint for a 13–23 y/o community sample (n=10 and growing!) with multi-echo fMRI, EMA & actigraphy: www.biorxiv.org/content/10.1...

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Juliette Brook @juliettebrook.bsky.social · May 6

Dreaming of a dataset that tracks mood, sleep & activity to better understand affective instability (AI)…AND paired with advanced MRI? 🤯
Check out our new bioRxiv preprint for a 13–23 y/o community sample (n=10 and growing!) with multi-echo fMRI, EMA & actigraphy: www.biorxiv.org/content/10.1...

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Linden Parkes @lindenmp.bsky.social · Apr 28

Excited to share the first major piece of work and preprint from my lab! Led by Jason Kim! 🥳🎉🤘

www.biorxiv.org/content/10.1...

a man applauds with the words so proud of my team above him

ALT: a man applauds with the words so proud of my team above him

media.tenor.com

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PennLINC @pennlinc.bsky.social · Feb 28

Special thanks to the folks who contributed to this release, including @tientong.bsky.social, Brooke Sevchik, @parkersingleton.bsky.social, @cieslakmatt.bsky.social, @tsalo.bsky.social, @stevenmeisler.com, Shivaram Karandikar, Gabriele De Leonardis, and Ashley Francisco.

PennLINC @pennlinc.bsky.social · Feb 28

In version 1.2.0, CuBIDS now uses the BIDS schema directly to parse and build filenames, uses the new schema-based BIDS validator, includes parameter values in variant names, a number of bug fixes, and improvements to the documentation and testing.

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PennLINC @pennlinc.bsky.social · Feb 28

CuBIDS takes over where conversion tools like heudiconv, BIDScoin, and ezBIDS leave off. It allows users to group files and subjects within datasets based on their parameters, which makes testing across heterogeneous datasets much easier.

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PennLINC @pennlinc.bsky.social · Feb 28

We're excited to announce version 1.2.0 of CuBIDS, a Python library for organizing BIDS datasets.

CuBIDS: Curation of BIDS — CuBIDS 1.2.0 documentation

cubids.readthedocs.io

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Golia Shafiei @goliashf.bsky.social · Feb 27

(1/18) Now out on BioRxiv‼️ Reproducible Brain Charts: An open data resource for mapping brain development and its associations with mental health | doi.org/10.1101/2025...

Funded by National Institute of Mental Health (NIMH)

Reproducible Brain Charts: An open data resource for mapping brain development and its associations with mental health

Major mental disorders are increasingly understood as disorders of brain development. Large and heterogeneous samples are required to define generalizable links between brain development and psychopat...

doi.org

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Alessandro Gozzi @gozziale.bsky.social · Feb 27

🔍 New must-see resource! 🧠
--> Reproducible Brain Charts – an open-data tool for mapping brain development & mental health

www.biorxiv.org/content/10.1...

👏 Kudos to @ted-satterthwaite.bsky.social and Michael Milham @childmindinstitute.bsky.social for leading this effort!

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bioRxiv Neuroscience @biorxiv-neursci.bsky.social · Feb 26

Reproducible Brain Charts: An open data resource for mapping brain development and its associations with mental health https://www.biorxiv.org/content/10.1101/2025.02.24.639850v1

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Matt Cieslak @cieslakmatt.bsky.social · Feb 13

It's hard to overstate what a big deal this paper is: onlinelibrary.wiley.com/doi/10.1002/.... Head motion in dMRI is NOT like head motion in BOLD.

Head Motion in Diffusion Magnetic Resonance Imaging: Quantification, Mitigation, and Structural Associations in Large, Cross‐Sectional Datasets Across the Lifespan

We characterized motion during diffusion MRI scans across 16,995 image sessions and find that (1) modern preprocessing pipelines effectively mitigate motion to the point where biases are not detectab....

onlinelibrary.wiley.com

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