Pereda Lab
@peredalab.bsky.social
Reposted by Pereda Lab
🚀 OPEN PhD POSITIONS in #SyntheticBiology!
Join #SYNBIO-CSIC, an EU-funded doctoral programme by CSIC:
✔ 20 positions
✔ Cutting-edge research in #EngineeringBiology
✔ Interdisciplinary training for future leaders
➡️https://lifehub.csic.es/synbio-cofund/
#MSCACOFUND #SYNBIO
Join #SYNBIO-CSIC, an EU-funded doctoral programme by CSIC:
✔ 20 positions
✔ Cutting-edge research in #EngineeringBiology
✔ Interdisciplinary training for future leaders
➡️https://lifehub.csic.es/synbio-cofund/
#MSCACOFUND #SYNBIO
December 4, 2025 at 12:26 PM
🚀 OPEN PhD POSITIONS in #SyntheticBiology!
Join #SYNBIO-CSIC, an EU-funded doctoral programme by CSIC:
✔ 20 positions
✔ Cutting-edge research in #EngineeringBiology
✔ Interdisciplinary training for future leaders
➡️https://lifehub.csic.es/synbio-cofund/
#MSCACOFUND #SYNBIO
Join #SYNBIO-CSIC, an EU-funded doctoral programme by CSIC:
✔ 20 positions
✔ Cutting-edge research in #EngineeringBiology
✔ Interdisciplinary training for future leaders
➡️https://lifehub.csic.es/synbio-cofund/
#MSCACOFUND #SYNBIO
Reposted by Pereda Lab
I just published: ERC-Plus: jackpot science or missed chance to fix academia?
My reflections on ERC-Plus, Europe’s newest ultra-competitive research grant and what it tells us about the academic culture we’re building.
medium.com/p/erc-plus-j...
My reflections on ERC-Plus, Europe’s newest ultra-competitive research grant and what it tells us about the academic culture we’re building.
medium.com/p/erc-plus-j...
ERC-Plus: jackpot science or missed chance to fix academia?
My reflections on ERC-Plus, Europe’s newest ultra-competitive research grant and what it tells us about the academic culture we’re…
medium.com
December 3, 2025 at 11:42 AM
I just published: ERC-Plus: jackpot science or missed chance to fix academia?
My reflections on ERC-Plus, Europe’s newest ultra-competitive research grant and what it tells us about the academic culture we’re building.
medium.com/p/erc-plus-j...
My reflections on ERC-Plus, Europe’s newest ultra-competitive research grant and what it tells us about the academic culture we’re building.
medium.com/p/erc-plus-j...
Reposted by Pereda Lab
Checking out the most famous steps in the history of science at night
December 2, 2025 at 9:31 PM
Checking out the most famous steps in the history of science at night
Reposted by Pereda Lab
Hemidesmosomes regulate epidermal differentiation during embryogenesis
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
Hemidesmosomes regulate epidermal differentiation during embryogenesis
In skin epidermis, integrins mediate adhesion of basal keratinocytes to the underlying basement membrane. While high expression of integrins has been correlated with stemness, there is limited direct ...
www.biorxiv.org
November 29, 2025 at 8:38 AM
Hemidesmosomes regulate epidermal differentiation during embryogenesis
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
Reposted by Pereda Lab
Completely wrong direction imo. It would be better and more efficient to increase funding rates of existing schemes funding more of the already fundable, great ideas for projects that are out there instead of yet another call with, most probably, less than 10% success rate.
· #AcademicSky ·
The European Research Council is launching €7m Plus Grants for ambitious, long‑term research — open to researchers at any career stage but limited to about 30 awards; current ERC grantees and applicants are ineligible, reports @clanicholson.bsky.social.
The European Research Council is launching €7m Plus Grants for ambitious, long‑term research — open to researchers at any career stage but limited to about 30 awards; current ERC grantees and applicants are ineligible, reports @clanicholson.bsky.social.
ERC’s new €7m Plus Grants open to researchers at any career stage - Research Professional News
European Research Council president describes scheme as part attempt to lure US talent
www.researchprofessionalnews.com
November 29, 2025 at 1:29 PM
Completely wrong direction imo. It would be better and more efficient to increase funding rates of existing schemes funding more of the already fundable, great ideas for projects that are out there instead of yet another call with, most probably, less than 10% success rate.
Reposted by Pereda Lab
Your periodic reminder that science is not done by a few selected "stars scientists". Science is done by hundred of thousands. Siloed money mean a few flashy discoveries and a lot of waste. Want to change things? Make funding accessible and stop funding calls with less than 2% success rate.
· #AcademicSky ·
The European Research Council is launching €7m Plus Grants for ambitious, long‑term research — open to researchers at any career stage but limited to about 30 awards; current ERC grantees and applicants are ineligible, reports @clanicholson.bsky.social.
The European Research Council is launching €7m Plus Grants for ambitious, long‑term research — open to researchers at any career stage but limited to about 30 awards; current ERC grantees and applicants are ineligible, reports @clanicholson.bsky.social.
ERC’s new €7m Plus Grants open to researchers at any career stage - Research Professional News
European Research Council president describes scheme as part attempt to lure US talent
www.researchprofessionalnews.com
November 29, 2025 at 10:53 AM
Your periodic reminder that science is not done by a few selected "stars scientists". Science is done by hundred of thousands. Siloed money mean a few flashy discoveries and a lot of waste. Want to change things? Make funding accessible and stop funding calls with less than 2% success rate.
Reposted by Pereda Lab
🎤 Entrevista completa sobre el Proyecto MicroMundo🦠, desarrollado en el IBFG, con nuestros investigadores🧑🔬 Beatriz Santos y Ramón Santamaría para La 8 Salamanca📺
Ya disponible 👉 www.facebook.com/share/v/1GPc...
Ya disponible 👉 www.facebook.com/share/v/1GPc...
November 27, 2025 at 2:14 PM
🎤 Entrevista completa sobre el Proyecto MicroMundo🦠, desarrollado en el IBFG, con nuestros investigadores🧑🔬 Beatriz Santos y Ramón Santamaría para La 8 Salamanca📺
Ya disponible 👉 www.facebook.com/share/v/1GPc...
Ya disponible 👉 www.facebook.com/share/v/1GPc...
Reposted by Pereda Lab
#OpenCloning is a an Open Source alternative to SnapGene/Benchling that supports automation and integration with other software
✅ Free
🔓 Open Source
🧬 More cloning methods than SnapGene
🤖 Can be automated with python
👨🔬 Built by a researcher — for researchers!
👉 Check it out at opencloning.org
✅ Free
🔓 Open Source
🧬 More cloning methods than SnapGene
🤖 Can be automated with python
👨🔬 Built by a researcher — for researchers!
👉 Check it out at opencloning.org
November 24, 2025 at 4:57 PM
#OpenCloning is a an Open Source alternative to SnapGene/Benchling that supports automation and integration with other software
✅ Free
🔓 Open Source
🧬 More cloning methods than SnapGene
🤖 Can be automated with python
👨🔬 Built by a researcher — for researchers!
👉 Check it out at opencloning.org
✅ Free
🔓 Open Source
🧬 More cloning methods than SnapGene
🤖 Can be automated with python
👨🔬 Built by a researcher — for researchers!
👉 Check it out at opencloning.org
Reposted by Pereda Lab
Optogenetic control of mechanotransduction based on light-induced homodimerization of talin url: journals.biologists.com/jcs/article-...
Optogenetic control of mechanotransduction based on light-induced homodimerization of talin
Integrin-based adhesion complexes serve as primary sites for actomyosin force transmission to the extracellular matrix, providing traction that drives cell mechanical responses including adhesion, mig...
journals.biologists.com
November 24, 2025 at 4:49 PM
Optogenetic control of mechanotransduction based on light-induced homodimerization of talin url: journals.biologists.com/jcs/article-...
Reposted by Pereda Lab
I am pleased to announce the release of ProteinDJ v2! This is a major update that integrates BindCraft into the pipeline as an alternative to RFdiffusion for binder generation. You can try it out here: github.com/PapenfussLab/proteindj
#ProteinDJ #BindCraft #ProteinDesign @wehi-research.bsky.social
#ProteinDJ #BindCraft #ProteinDesign @wehi-research.bsky.social
November 25, 2025 at 3:01 AM
I am pleased to announce the release of ProteinDJ v2! This is a major update that integrates BindCraft into the pipeline as an alternative to RFdiffusion for binder generation. You can try it out here: github.com/PapenfussLab/proteindj
#ProteinDJ #BindCraft #ProteinDesign @wehi-research.bsky.social
#ProteinDJ #BindCraft #ProteinDesign @wehi-research.bsky.social
Reposted by Pereda Lab
Compartimos la información de los tres eventos que tenemos programados para el viernes 28.
Seminario científico del @ciccancer.bsky.social (@usaloficial.bsky.social - @csic.es) de 10-11 horas: www.cicancer.org/press-room/c...
Seminario científico del @ciccancer.bsky.social (@usaloficial.bsky.social - @csic.es) de 10-11 horas: www.cicancer.org/press-room/c...
November 24, 2025 at 12:35 PM
Compartimos la información de los tres eventos que tenemos programados para el viernes 28.
Seminario científico del @ciccancer.bsky.social (@usaloficial.bsky.social - @csic.es) de 10-11 horas: www.cicancer.org/press-room/c...
Seminario científico del @ciccancer.bsky.social (@usaloficial.bsky.social - @csic.es) de 10-11 horas: www.cicancer.org/press-room/c...
Reposted by Pereda Lab
External seminar at the IBFG! 📢
Talk by Dr. Héctor García-Seisdedos - @ibmb-csic.bsky.social (Barcelona, Spain) 🥼
🔬Topic: Infinite assembly of folded proteins
📍 IBFG Auditorium, Salamanca
🗓️ Nov 28, 2025 – 12:00 PM
Talk by Dr. Héctor García-Seisdedos - @ibmb-csic.bsky.social (Barcelona, Spain) 🥼
🔬Topic: Infinite assembly of folded proteins
📍 IBFG Auditorium, Salamanca
🗓️ Nov 28, 2025 – 12:00 PM
November 24, 2025 at 3:06 PM
External seminar at the IBFG! 📢
Talk by Dr. Héctor García-Seisdedos - @ibmb-csic.bsky.social (Barcelona, Spain) 🥼
🔬Topic: Infinite assembly of folded proteins
📍 IBFG Auditorium, Salamanca
🗓️ Nov 28, 2025 – 12:00 PM
Talk by Dr. Héctor García-Seisdedos - @ibmb-csic.bsky.social (Barcelona, Spain) 🥼
🔬Topic: Infinite assembly of folded proteins
📍 IBFG Auditorium, Salamanca
🗓️ Nov 28, 2025 – 12:00 PM
Reposted by Pereda Lab
"Como pasa con mucho de lo que rodea a la ciencia en España, el nombre no es muy conocido en nuestros lares. La única forma en la que un científico salta al candelero es cuando le dan algún premio, se implica en un escándalo o fallece."
elpais.com/ciencia/2025...
elpais.com/ciencia/2025...
Antonio García-Bellido y el hilo de Ariadna de la biología
El influyente científico, fallecido el 10 de noviembre a los 89 años, deja una pregunta: cómo las conversaciones entre células controlan el espacio y la forma
elpais.com
November 19, 2025 at 2:02 PM
"Como pasa con mucho de lo que rodea a la ciencia en España, el nombre no es muy conocido en nuestros lares. La única forma en la que un científico salta al candelero es cuando le dan algún premio, se implica en un escándalo o fallece."
elpais.com/ciencia/2025...
elpais.com/ciencia/2025...
Reposted by Pereda Lab
Excited to share our new preprint in collaboration with Ahmet Yildiz's lab. Check out how our team uncovers a novel binding footprint and motor regulation mechanism for MAP9 Congrats to Burak Cetin and @aryantaheri.bsky.social
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
November 18, 2025 at 10:43 PM
Excited to share our new preprint in collaboration with Ahmet Yildiz's lab. Check out how our team uncovers a novel binding footprint and motor regulation mechanism for MAP9 Congrats to Burak Cetin and @aryantaheri.bsky.social
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
Reposted by Pereda Lab
On #EuropeAntibioticAwarenessDay, we highlight the great and impactful work done in structural biology on managing and combatting antibiotic resistance, including work from Markus Weingarth and team at @utrechtuniversity.bsky.social through Instruct-ERIC!
instruct-eric.org/scientifichi...
instruct-eric.org/scientifichi...
Instruct-NL Develop Clovibactin: The Potential New Antibiotic with Low Resistance
Instruct-ERIC is a pan-European research infrastructure in structural biology, making high-end technologies and methods available to all European researchers.
instruct-eric.org
November 18, 2025 at 2:46 PM
On #EuropeAntibioticAwarenessDay, we highlight the great and impactful work done in structural biology on managing and combatting antibiotic resistance, including work from Markus Weingarth and team at @utrechtuniversity.bsky.social through Instruct-ERIC!
instruct-eric.org/scientifichi...
instruct-eric.org/scientifichi...
Reposted by Pereda Lab
2/ For full step-by-step instructions, check out our newly published
@cp-starprotocols.bsky.social
article:
star-protocols.cell.com/protocols/4574
Below is a brief overview of the 5 programs included in the suite.👇
@cp-starprotocols.bsky.social
article:
star-protocols.cell.com/protocols/4574
Below is a brief overview of the 5 programs included in the suite.👇
Cell Press: STAR Protocols
STAR Protocols is an open access, peer-reviewed journal from Cell Press. We offer structured, transparent, accessible, and repeatable step-by-step experimental and computational protocols from all are...
star-protocols.cell.com
November 16, 2025 at 6:38 PM
2/ For full step-by-step instructions, check out our newly published
@cp-starprotocols.bsky.social
article:
star-protocols.cell.com/protocols/4574
Below is a brief overview of the 5 programs included in the suite.👇
@cp-starprotocols.bsky.social
article:
star-protocols.cell.com/protocols/4574
Below is a brief overview of the 5 programs included in the suite.👇
Reposted by Pereda Lab
1/ With jamdock-suite, you can automate every major step of virtual screening in a local environment:
🔹 Compound library generation
🔹 Receptor preparation
🔹 Vina docking
🔹 Resuming interrupted runs
🔹 Ranking and analyzing hits
💻 Works on Windows 10/11, Linux, and macOS.
🔹 Compound library generation
🔹 Receptor preparation
🔹 Vina docking
🔹 Resuming interrupted runs
🔹 Ranking and analyzing hits
💻 Works on Windows 10/11, Linux, and macOS.
November 16, 2025 at 6:38 PM
1/ With jamdock-suite, you can automate every major step of virtual screening in a local environment:
🔹 Compound library generation
🔹 Receptor preparation
🔹 Vina docking
🔹 Resuming interrupted runs
🔹 Ranking and analyzing hits
💻 Works on Windows 10/11, Linux, and macOS.
🔹 Compound library generation
🔹 Receptor preparation
🔹 Vina docking
🔹 Resuming interrupted runs
🔹 Ranking and analyzing hits
💻 Works on Windows 10/11, Linux, and macOS.
Reposted by Pereda Lab
🚀 Interested in large-scale virtual screening using molecular docking?
Meet jamdock-suite:
github.com/jamanso/jamd...
a free toolkit that automates the entire workflow including compound library generation and docking analysis. 🧵
Meet jamdock-suite:
github.com/jamanso/jamd...
a free toolkit that automates the entire workflow including compound library generation and docking analysis. 🧵
November 16, 2025 at 6:38 PM
🚀 Interested in large-scale virtual screening using molecular docking?
Meet jamdock-suite:
github.com/jamanso/jamd...
a free toolkit that automates the entire workflow including compound library generation and docking analysis. 🧵
Meet jamdock-suite:
github.com/jamanso/jamd...
a free toolkit that automates the entire workflow including compound library generation and docking analysis. 🧵
Reposted by Pereda Lab
Protocol for an automated virtual screening pipeline including library generation and docking evaluation #protocol #starprotocols #cellpress
Protocol for an automated virtual screening pipeline including library generation and docking evaluation
Here, we present a protocol for an automated virtual screening pipeline. We describe steps for generating
compound libraries for computational docking including Food and Drug Administration (FDA)-approved drugs, setting
up the receptor and grid box, and docking a library of compounds. We then detail procedures for ranking docking
results. This protocol offers scripts for Unix-like systems, lowering the access barrier for researchers
interested in structure-based drug disc...
dlvr.it
November 15, 2025 at 8:26 PM
Protocol for an automated virtual screening pipeline including library generation and docking evaluation #protocol #starprotocols #cellpress
Reposted by Pereda Lab
Thank you so much for the opportunity to attend your talk at the IBFG 🙌. It was truly inspiring! ✨👏 @palconh.bsky.social
November 14, 2025 at 12:52 PM
Thank you so much for the opportunity to attend your talk at the IBFG 🙌. It was truly inspiring! ✨👏 @palconh.bsky.social
Reposted by Pereda Lab
Instruct-ES Workshop, Integrative Structural Biology in the new Instruct-ES Center Madrid – January 29-30, 2026, at the IQF Blas Cabrera (CSIC) @iqf-csic.bsky.social @instruct-eric.bsky.social instruct-eric.es/2025/10/10/2... #NMRchat 🧲
Integrative Structural Biology in the new Instruct-ES Center Madrid - January 29-30, 2026 - Instruct ERIC Spain
instruct-eric.es
November 12, 2025 at 8:04 PM
Instruct-ES Workshop, Integrative Structural Biology in the new Instruct-ES Center Madrid – January 29-30, 2026, at the IQF Blas Cabrera (CSIC) @iqf-csic.bsky.social @instruct-eric.bsky.social instruct-eric.es/2025/10/10/2... #NMRchat 🧲
Reposted by Pereda Lab
Very grateful to the Danish Cancer Society and our MBG colleagues for their support!
This grant will enable us to expand our research scope and grow our team.
mbg.au.dk/en/news-and-...
This grant will enable us to expand our research scope and grow our team.
mbg.au.dk/en/news-and-...
Knæk Cancer grant to support new research in DNA repair mechanisms
Assistant Professor Pablo Alcón from the Department of Molecular Biology and Genetics has received a three-year Knæk Cancer grant of DKK 3.6 million from the Danish Cancer Society. The project aims to...
mbg.au.dk
November 12, 2025 at 10:13 AM
Very grateful to the Danish Cancer Society and our MBG colleagues for their support!
This grant will enable us to expand our research scope and grow our team.
mbg.au.dk/en/news-and-...
This grant will enable us to expand our research scope and grow our team.
mbg.au.dk/en/news-and-...
Reposted by Pereda Lab
👉 Don’t miss this opportunity to explore how cells detect and repair dangerous DNA lesions through the Fanconi anaemia pathway and what cutting-edge imaging is revealing about the molecular mechanisms that safeguard our genome.
#DNARepair #Genome #FanconiAnaemia #CancerResearch
#DNARepair #Genome #FanconiAnaemia #CancerResearch
November 11, 2025 at 12:21 PM
👉 Don’t miss this opportunity to explore how cells detect and repair dangerous DNA lesions through the Fanconi anaemia pathway and what cutting-edge imaging is revealing about the molecular mechanisms that safeguard our genome.
#DNARepair #Genome #FanconiAnaemia #CancerResearch
#DNARepair #Genome #FanconiAnaemia #CancerResearch
Reposted by Pereda Lab
Extraordinary Seminar at the IBFG!
📢 Talk by Dr. Pablo Alcón - Aarhus University (Aarhus, Denmark)
🔬Topic: Understanding DNA Repair: Visualizing Tumour Suppressors in Action
🗓 Nov 14, 2025 – 12:00 PM
📍 IBFG Auditorium, Salamanca
📢 Talk by Dr. Pablo Alcón - Aarhus University (Aarhus, Denmark)
🔬Topic: Understanding DNA Repair: Visualizing Tumour Suppressors in Action
🗓 Nov 14, 2025 – 12:00 PM
📍 IBFG Auditorium, Salamanca
November 11, 2025 at 12:21 PM
Extraordinary Seminar at the IBFG!
📢 Talk by Dr. Pablo Alcón - Aarhus University (Aarhus, Denmark)
🔬Topic: Understanding DNA Repair: Visualizing Tumour Suppressors in Action
🗓 Nov 14, 2025 – 12:00 PM
📍 IBFG Auditorium, Salamanca
📢 Talk by Dr. Pablo Alcón - Aarhus University (Aarhus, Denmark)
🔬Topic: Understanding DNA Repair: Visualizing Tumour Suppressors in Action
🗓 Nov 14, 2025 – 12:00 PM
📍 IBFG Auditorium, Salamanca
Reposted by Pereda Lab
🧠 Fully funded 4-year PhD studentship 🧠 Please repost
BBSRC NWD project with @parikki.bsky.social and @iamabyron.bsky.social
Come join us to look at how mechanical and oxidative stress signalling pathways converge on the synaptic scaffold protein talin.
www.findaphd.com/phds/project...
BBSRC NWD project with @parikki.bsky.social and @iamabyron.bsky.social
Come join us to look at how mechanical and oxidative stress signalling pathways converge on the synaptic scaffold protein talin.
www.findaphd.com/phds/project...
(BBSRC NWD) A novel redox mechanosignalling nexus in the synapse that is misregulated in neurodegeneration at University of Liverpool on FindAPhD.com
PhD Project - (BBSRC NWD) A novel redox mechanosignalling nexus in the synapse that is misregulated in neurodegeneration at University of Liverpool, listed on FindAPhD.com
www.findaphd.com
November 11, 2025 at 10:29 AM
🧠 Fully funded 4-year PhD studentship 🧠 Please repost
BBSRC NWD project with @parikki.bsky.social and @iamabyron.bsky.social
Come join us to look at how mechanical and oxidative stress signalling pathways converge on the synaptic scaffold protein talin.
www.findaphd.com/phds/project...
BBSRC NWD project with @parikki.bsky.social and @iamabyron.bsky.social
Come join us to look at how mechanical and oxidative stress signalling pathways converge on the synaptic scaffold protein talin.
www.findaphd.com/phds/project...