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QI@CSHL

@qiatcshl.bsky.social

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Quantitative Imaging: From Acquisition to Analysis course at Cold Spring Harbor Laboratory / Posts by QI Instructors & TAs Applications due 1/31! https://meetings.cshl.edu/courses.aspx?course=C-QICM

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QI@CSHL @qiatcshl.bsky.social · Apr 1

Week 2! 🔬🖥️📊

Reposted by QI@CSHL

HMS Image Analysis Collaboratory @hms-iac.bsky.social · May 8

💻 Apply to our beginner-friendly Boston Bioimage Analysis Course!

Get started with Python and learn to analyze fluorescence microscopy images — no coding experience required!

Fee waivers available thanks to funding from @bioimagingna.bsky.social!

🗓️ Apply June 1st!
iac.hms.harvard.edu/bobiac/2025/

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Reposted by QI@CSHL

HMS Image Analysis Collaboratory @hms-iac.bsky.social · Apr 22

‼BREAKING‼
We’ve secured new funding for the Boston Bioimage Analysis Course (BoBiAC) this July at Harvard Med School! Course fees down 37%, with fee waivers for academic applicants, for an intensive hands-on intro to bioimage analysis with Python!

Apply by June 1st!
iac.hms.harvard.edu/bobiac/2025

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Reposted by QI@CSHL

Damian Dalle Nogare @damiandn.bsky.social · Apr 7

Slick t-shirt design for @qiatcshl.bsky.social made by @sciencedoodles.bsky.social featuring fan favorite the bench scope

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Reposted by QI@CSHL

Matt Lycas @lycasworks.bsky.social · Apr 7

Happy Expansion Microscopy Day at Quantitative Imaging @qiatcshl.bsky.social

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Reposted by QI@CSHL

Suliana Manley @sulianamanley.bsky.social · Apr 6

Our latest preprint www.biorxiv.org/content/10.1..., describes Willi Stepp’s project to make smart microscopy even gentler by doing event detection in phase contrast. We developed neural networks to detect mito-LD and mito-lysosome contacts, as well as mitochondrial pre-fission constrictions.

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Reposted by QI@CSHL

Estefania Sanchez-Vasquez @niasv.bsky.social · Apr 6

Light sheet baby!! QI2025

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QI@CSHL @qiatcshl.bsky.social · Apr 5

Check out their time lapse! 😍🔬Not pictured: the transmitted light image to check for photodamage!

QI@CSHL @qiatcshl.bsky.social · Apr 5

Congratulations to students Jana & Michal for winning the Stayin' Alive challenge: acquiring a live cell time lapse with minimal photodamage! #stayinalive

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Reposted by QI@CSHL

Damian Dalle Nogare @damiandn.bsky.social · Apr 5

Celebrating the last analysis lab at @qiatcshl.bsky.social in style. Friday night disco music (🤮) and bioimage analysis (😃)

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QI@CSHL @qiatcshl.bsky.social · Apr 4

Our first prize winners for their confocal data presentation: 'Pinhole Pros' Federico & Naly!

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Reposted by QI@CSHL

Damian Dalle Nogare @damiandn.bsky.social · Mar 29

Analysis team cooking up some cellprofiler magic at @qiatcshl.bsky.social

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QI@CSHL @qiatcshl.bsky.social · Apr 3

Congratulations to students @nancypaniagua.bsky.social & Michal for placing 1st & 2nd place in our @ilastik-team.bsky.social pixel classifier challenge to segment with the least amount of annotations! #lazyannotationsftw

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QI@CSHL @qiatcshl.bsky.social · Apr 2

The students (totally) loved our TIRF lab! Check out this fluorescein solution sample we used to visualize internal reflection on the scope - 📸 by student Augusto Berrocal

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QI@CSHL @qiatcshl.bsky.social · Apr 1

Week 2! 🔬🖥️📊

QI@CSHL @qiatcshl.bsky.social · Mar 31

Our image analysis expert instructors, @bethcimini.bsky.social, @damiandn.bsky.social, @florianjug.bsky.social & Hunter Elliott, are in full swing!

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QI@CSHL @qiatcshl.bsky.social · Mar 31

It's TIRF time again at QI!!! 🎉 🔬Check out @jencwaters.bsky.social's infamous TIRF demo to understand the principle behind total internal reflection vs refraction! #gonetirfing #criticallyawesome

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Reposted by QI@CSHL

QI@CSHL @qiatcshl.bsky.social · Mar 29

Our openSPIM is officially up and running to image the latest catch of the day! Fueled by pymmcore-plus & pymmcore-gui! 💪⚡🔬 pymmcore-plus.github.io/pymmcore-plus/ github.com/pymmcore-plu...

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QI@CSHL @qiatcshl.bsky.social · Mar 29

Our openSPIM is officially up and running to image the latest catch of the day! Fueled by pymmcore-plus & pymmcore-gui! 💪⚡🔬 pymmcore-plus.github.io/pymmcore-plus/ github.com/pymmcore-plu...

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QI@CSHL @qiatcshl.bsky.social · Mar 29

I spy with my little eye...a sneak peek of our light sheet microscopy lab samples! Perks of being a
@cshlnews.bsky.social course is access to lots of great sample collecting spots! #catchoftheday #tardigrades

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Reposted by QI@CSHL

Estefania Sanchez-Vasquez @niasv.bsky.social · Mar 29

4 out of 16 ❤️❤️❤️🔬🔬🔬🔬🔬 @qiatcshl.bsky.social

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Reposted by QI@CSHL

Rylie Walsh @ryliewalsh.bsky.social · Mar 29

Another wonderful @sciencedoodles.bsky.social creation!

QI@CSHL @qiatcshl.bsky.social · Mar 28

Our new course logo, by @sciencedoodles.bsky.social

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QI@CSHL @qiatcshl.bsky.social · Mar 28

After learning about PSFs, our students are excited about the best microscopy model system: beads! Thanks @leicamicrosystems.bsky.social, @nikonmicro.bsky.social, & ASI for supporting our course! #fluorescentbeads #TheBeadles

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QI@CSHL @qiatcshl.bsky.social · Mar 28

Our new course logo, by @sciencedoodles.bsky.social

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Reposted by QI@CSHL

Florian Jug @florianjug.bsky.social · Mar 28

Love this place… 🥰
@qiatcshl.bsky.social @cshlaboratory.bsky.social

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QI@CSHL @qiatcshl.bsky.social · Mar 27

Thank you! And we teach best practices for cleaning objectives as well - both on Day 1.