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Reposted by Shingo Miyauchi

Francis M. Martin @fmartin54.bsky.social · Aug 29

Looking forward to visiting Zhejiang University …

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Reposted by Shingo Miyauchi

Francis M. Martin @fmartin54.bsky.social · Aug 29

My Chinese colleagues are keeping me busy 😉

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Shingo Miyauchi @shingomiyauchi.bsky.social · Aug 6

🔶Visual Omics Series 13🔶 Out Now #CurrentBiology Decipher the unique genomes of morels, truffles, and their toxic kin, styled with Gustav Klimt's artistry. @fmartin54.bsky.social @oistedu.bsky.social @mycocosm.bsky.social 👉 shorturl.at/CSZDP 🧪🧬🖥️ #Genomics #Fungi #DataViz

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Reposted by Shingo Miyauchi

Francis M. Martin @fmartin54.bsky.social · Aug 5

Pangeneric analyses reveal the divergent genome
evolution and ecologies between morels and truffles
in the Morchellaceae published in
@currentbiology.bsky.social

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Photo: M. Vulgaris (Ph Clowez)

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Reposted by Shingo Miyauchi

Francis M. Martin @fmartin54.bsky.social · Aug 1

Un beau livre qui dévoile la vie intime d’essences incontournables de nos régions : Chêne, tilleul, sapin, mélèze, frêne, saule… des portraits personnels illustrant combien chaque arbre est un monde à part entière. Superbement illustré par Emmanuelle Boîtier …
boutique.salamandre.org/arbres-secre...

Arbres, secrets de géants - Prévente > Boutique - Salamandre > Boutique - Salamandre

Le livre Un beau livre très soigné qui dévoile la vie intime de vingt-quatre essences incontournables de nos régions. Chê

boutique.salamandre.org

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Reposted by Shingo Miyauchi

Australasian Mycological Society @ausmycsoc.bsky.social · Mar 26

Interested in improving soil biodiversity and promote sustainable forestry?

Think about applying for a PhD to work with @fungidownunder.bsky.social and @westsyduhie.bsky.social
industrial partner Rhizocore, seeking to improve mycorrhizal diversity in plantation forestry

tinyurl.com/jxcdhp3p

Characterising metabolite-driven structuring of healthy soil microbiomes by mycorrhizal fungi | Western Sydney University

tinyurl.com

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Reposted by Shingo Miyauchi

Tonni Andersen @tonnigrubeandersen.bsky.social · Mar 21

Finally!
Im so excited to present to culmination of many years of work from the fantastic Defeng Shen and some great collaborators. For details, I have made a digested thread below, but if you are more interested feel free to reach out (and read the paper of course).
www.science.org/doi/10.1126/...

Apoplastic barriers are essential for nodule formation and nitrogen fixation in Lotus japonicus

Establishment of the apoplastic root barrier known as the Casparian strip occurs early in root development. In legumes, this area overlaps with nitrogen-fixing nodule formation, which raises the possi...

www.science.org

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Reposted by Shingo Miyauchi

Francis M. Martin @fmartin54.bsky.social · Mar 7

I’m thrilled to let you now that our paper on a Fusarium forming ectomycorrhiza-like interactions was published in IM Fungus:
doi.org/10.3897/imaf...
A great collaboration with Zhilin Yuan'steam!

A fusarioid fungus forms mutualistic interactions with poplar trees that resemble ectomycorrhizal symbiosis

Fusarium species, recognised as global priority pathogens, frequently induce severe diseases in crops; however, certain species exhibit alternative symbiotic lifestyles and are either non-pathogenic o...

imafungus.pensoft.net

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Shingo Miyauchi @shingomiyauchi.bsky.social · Mar 8

🌟Call for Papers: Genomics of Symbiosis in BMC Genomics🌟 Looking forward to your exciting manuscripts on all types of symbiosis on earth including symbiotic fungi and their hosts! 🌿🍄 biomedcentral.com/collections/... #BMCGenomics @biomedcentral.bsky.social 🧪🧬🖥️

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Reposted by Shingo Miyauchi

Society for the Protection of Underground Networks (SPUN) @spun.earth · Feb 26

Learn about our new research uncovering #fungi and plant trade systems, and hear from 3 of the authors. Watch the video: youtu.be/tOUhu2tXIWg?...

Exploring “A travelling-wave strategy for plant–fungal trade”

YouTube video by SPUN

youtu.be

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Reposted by Shingo Miyauchi

Society for the Protection of Underground Networks (SPUN) @spun.earth · Feb 26

Our newest research on plant-fungal trade published today in @nature.com.

The work, led by scientists from Vrije Universiteit, Princeton University, SPUN & AMOLF combines robotics, mycology & biophysics to reveal underground supply-chain dynamics.

Open access:
www.nature.com/articles/s41...

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Reposted by Shingo Miyauchi

Francis M. Martin @fmartin54.bsky.social · Feb 22

An exciting exploration of morel mitogenomes with Tao Gang, Shingo and the JGI team!

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Shingo Miyauchi @shingomiyauchi.bsky.social · Feb 22

🟢Visual Omics Series 12🟢 Out now! Explore the mitochondrial genomes of fascinating Morchella species through a retro 80s video game vibe. @fmartin54.bsky.social @imafungus.pensoft.net #Genomics #Fungi #DataViz 👉https://shorturl.at/KPqyH 🧪🧬🖥️

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Shingo Miyauchi @shingomiyauchi.bsky.social · Feb 19

Happy to be collaborating on this study! Congrats to all the co-authors on this achievement. 🎉
www.nature.com/articles/s41...

Conserved immunomodulation and variation in host association by Xanthomonadales commensals in Arabidopsis root microbiota - Nature Plants

The authors show that immunosuppression is highly conserved in the bacterial order Xanthomonadales. This feature, which preceded their specialization as host-adapted pathogens, probably contributes to...

www.nature.com

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Shingo Miyauchi @shingomiyauchi.bsky.social · Feb 12

Is it possible for me to join the group?

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Reposted by Shingo Miyauchi

Francis M. Martin @fmartin54.bsky.social · Feb 5

Thrilled to see our paper "Phylogenomic insights into the taxonomy, ecology, and mating systems of the lorchel family Discinaceae (Pezizales, Ascomycota)" released online. An amazing collaboration with Alden Dirks, Tim James and many others ...
www.sciencedirect.com/science/arti...

Phylogenomic insights into the taxonomy, ecology, and mating systems of the lorchel family Discinaceae (Pezizales, Ascomycota)

Lorchels, also known as false morels (Gyromitra sensu lato), are iconic due to their brain-shaped mushrooms and production of gyromitrin, a deadly myc…

www.sciencedirect.com

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Shingo Miyauchi @shingomiyauchi.bsky.social · Feb 2

Is it possible for me to be included?🙏

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Shingo Miyauchi @shingomiyauchi.bsky.social · Jan 1

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Shingo Miyauchi @shingomiyauchi.bsky.social · Dec 25

🟡 Visual Omics Series 11 🟡 Published now! Discover genomic signatures in ectomycorrhizal fungi through a comparative analysis of 63 ECM fungi, uniquely illustrated with Andy Warhol-inspired art. 🧬🖥️ @fmartin54.bsky.social #Evolution #Genomics #Fungi #DataViz 👉 shorturl.at/xqUBK

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Reposted by Shingo Miyauchi

Francis M. Martin @fmartin54.bsky.social · Dec 24

A great collection of papers and a superbe illustration of the mycorrhizal networks from Florian Gadenne on the cover page 👍

New Phytologist @newphyt.bsky.social · Dec 24

Special Issue: #Mycorrhizal research now

By integrating molecular, physiological, and ecological perspectives, this collection untangles interactions between #plants and #fungi and their effects on terrestrial ecosystems.

https://nph.onlinelibrary.wiley.com/toc/14698137/2024/242/4

New Phytologist Special Issue: Mycorrhizal research now. View of the soil mycorrhizal community in a hypothetical forest dominated by oak species associated with different types of mycorrhizal fungi.

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Shingo Miyauchi @shingomiyauchi.bsky.social · Dec 17

Thank you very much for the reply. I found it a bit ambiguous, but I'm looking forward to reviewing your manuscript. 😀

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Shingo Miyauchi @shingomiyauchi.bsky.social · Dec 17

🧬 🖥️

Reposted by Shingo Miyauchi

Chenxin Li, PhD @chenxinli2.bsky.social · Dec 14

In addition to applied statistics, I have another repository on #DataVisualization: "quick data vis" (github.com/cxli233/Quic...). It used to be under "Online_R_learning" but now it has its own repository on GitHub. I have used this content to teach 1st year grad students for 3 years.

Table of content for "quick data vis": basics of R coding, tidy data frames, ggplot, mean separation, proportional data, heatmaps, relationship data, plot assembly.

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Shingo Miyauchi @shingomiyauchi.bsky.social · Dec 13

Can I join your team?

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Shingo Miyauchi @shingomiyauchi.bsky.social · Dec 10

#SciArt 🐡