Thelonevirologist
@thelonevirologist.bsky.social
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Virologist. Likes history, hiking, tea, coffee & a good movie.Favourite viruses? Coronavirus, Emerging & Oncogenic Viruses. Favourite country? UK. Dad. Bibliophile.
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Near-complete genome sequence of a reassortant fish nervous necrosis virus isolated from a European sea bass (Dicentrarchus labrax) in Tunisia journals.asm.org/doi/10.1128/...
Near-complete genome sequence of a reassortant fish nervous necrosis virus isolated from a European sea bass (Dicentrarchus labrax) in Tunisia | Microbiology Resource Announcements
Betanodavirus, also known as nervous necrosis virus (NNV), causing the viral encephalopathy and retinopathy disease (VER) in finfish, belongs to the Nodaviridae family, genus Betanodavirus (1). It is considered a major problem for European seabass (Dicentrarchus labrax) farming in the Mediterranean (2). Its linear genome is composed of two positive-sense single-stranded RNA molecules, RNA1 (3.1 Kb) and RNA2 (1.4 Kb), and a third RNA1 subgenomic transcript (RNA3) (0.4 kb) (3–5). Based on the small variable region of RNA2, the following four species have been identified: Betanodavirus pseudocarangis (SJNNV), Betanodavirus takifugui (TPNNV), Betanodavirus verasperi (BFNNV), and Betanodavirus epinepheli (RGNNV) (2, 6). Natural reassortment events can occur, and two reassortants (RGNNV/SJNNV and SJNNV/RGNNV) have been described, representing a new challenge for Mediterranean aquaculture (7–11). In the present study, following a mortality event of European seabass in offshore cages located along the Tunisian Sahel coastline in August 2023, NNV was isolated from brain samples using the SSN-1 cell line incubated at 25°C (12). Qualitative real-time reverse transcription polymerase chain reaction (rRT-PCR) targeting RNA1 was performed on the cell supernatant to confirm the viral identity (13). To obtain the complete sequence, the complementary DNA (cDNA) was used as a template in nine different PCRs, five targeting the RNA1 and four targeting the RNA2. The primer sets used for the amplification of the complete genome are detailed in Panzarin et al. (14). cDNA synthesis was carried out using the SuperScriptTM III Reverse Transcriptase Kit, followed by the 9 PCR reactions performed using the Platinum Taq DNA Polymerase kit. Each 25 µL reaction included 5 µL cDNA, 10× buffer, 0.2 mM dNTPs, 1.5 mM MgCl₂, 10 U Taq polymerase, and 0.5 µM of each primer. Expected amplicon sizes were 874, 684, 849, 758, and 903 bp for RNA1, and 593, 605, 424, and 399 bp for RNA2. Amplicons were purified with ExoSAP-IT Express and sequenced bidirectionally using the BrilliantDye Terminator (v3.1) Cycle Sequencing Kit on a 24-capillary ABI PRISM 3500xl Dx Genetic Analyzer. Sequencing data were assembled and edited with SeqScape v3.0. Sequences were aligned and compared to representative ones for each viral species and to all available complete genomes from RGNNV/SJNNV Mediterranean strains using MEGA 7.0 (Table 1) (15). Phylogenetic trees are shown in Fig. 1. The genome obtained was composed of an RNA1 ORF, 2,949 bases long (GC content 52.2%), and an RNA2, measuring 1,023 bases (GC content 55.3%). The RNA1 ORF (982 amino acids) showed high identity (98.9%–99.8%) with the other Mediterranean reassortant strains (nucleic identity: 98.3%–99.1%). The RNA2 ORF (340 amino acids) showed an identity of 98.2%–99.7% (nucleic identity: 97.0%–99.0%).
journals.asm.org
HTLV-I Basic Leucine Zipper Factor (sHBZ) Actively Associates with Nucleophosmin (B23) in the Nucleolus www.mdpi.com/3318650
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