Adolfo Poma
@apoma.bsky.social
GōMartini 3 developer. 🇵🇪 Dad. Fascinated by how pathogens interact with cells.
🌐 http://pomalab.ippt.pan.pl/web/
🌐 http://pomalab.ippt.pan.pl/web/
🚀 New preprint!
We present an optimized contact map protocol for GōMartini 3 protein-assembly simulations.
🔹 Uses high-freq contacts from MD
🔹 Cuts contact sets by ~20–30% while keeping stability
🔹 Improves exploration of metastable states (e.g. SARS-CoV-2 spike)
Preprint: doi.org/10.1101/2025...
We present an optimized contact map protocol for GōMartini 3 protein-assembly simulations.
🔹 Uses high-freq contacts from MD
🔹 Cuts contact sets by ~20–30% while keeping stability
🔹 Improves exploration of metastable states (e.g. SARS-CoV-2 spike)
Preprint: doi.org/10.1101/2025...
November 16, 2025 at 9:30 PM
🚀 New preprint!
We present an optimized contact map protocol for GōMartini 3 protein-assembly simulations.
🔹 Uses high-freq contacts from MD
🔹 Cuts contact sets by ~20–30% while keeping stability
🔹 Improves exploration of metastable states (e.g. SARS-CoV-2 spike)
Preprint: doi.org/10.1101/2025...
We present an optimized contact map protocol for GōMartini 3 protein-assembly simulations.
🔹 Uses high-freq contacts from MD
🔹 Cuts contact sets by ~20–30% while keeping stability
🔹 Improves exploration of metastable states (e.g. SARS-CoV-2 spike)
Preprint: doi.org/10.1101/2025...
Today our team member @fcofas.bsky.social is attending this @cecamevents.bsky.social organised in Sardegna: The Dual Nature of Glycans in Protein-Protein Interactions: Bridging Computational and Experimental Insights.
Thanks to @ncn.gov.pl for this great support!
Thanks to @ncn.gov.pl for this great support!
September 7, 2025 at 6:08 PM
Today our team member @fcofas.bsky.social is attending this @cecamevents.bsky.social organised in Sardegna: The Dual Nature of Glycans in Protein-Protein Interactions: Bridging Computational and Experimental Insights.
Thanks to @ncn.gov.pl for this great support!
Thanks to @ncn.gov.pl for this great support!
🚨 "Evolution of the SARS-CoV-2 Spike Protein in Utilizing Host Transmembrane Serine Proteases"
🔬 How variants exploit more than just TMPRSS2 to enter cells.
Big thanks to @kpyrc.bsky.social team for this partnership 😎.
📄 Read: doi.org/10.1016/j.is... now in @cp-iscience.bsky.social
🔬 How variants exploit more than just TMPRSS2 to enter cells.
Big thanks to @kpyrc.bsky.social team for this partnership 😎.
📄 Read: doi.org/10.1016/j.is... now in @cp-iscience.bsky.social
August 25, 2025 at 9:14 PM
🚨 "Evolution of the SARS-CoV-2 Spike Protein in Utilizing Host Transmembrane Serine Proteases"
🔬 How variants exploit more than just TMPRSS2 to enter cells.
Big thanks to @kpyrc.bsky.social team for this partnership 😎.
📄 Read: doi.org/10.1016/j.is... now in @cp-iscience.bsky.social
🔬 How variants exploit more than just TMPRSS2 to enter cells.
Big thanks to @kpyrc.bsky.social team for this partnership 😎.
📄 Read: doi.org/10.1016/j.is... now in @cp-iscience.bsky.social