Lukasz Bugaj
bugajlab.bsky.social
Lukasz Bugaj
@bugajlab.bsky.social
Asst. Professor @ Penn Bioengineering. Cell Signaling, optogenetics, synthetic biology, cancer signaling, regenerative medicine, bio-tinkering. www.bugajlab.com
See also a concurrent preprint showing that diverse RTK fusions can suppress transmembrane EGFR. These other fusions also mostly did *not* form condensates, but did form small, active multimers.

www.biorxiv.org/content/10.1...
EGFR suppression and drug-induced potentiation are widespread features of oncogenic RTK fusions
Regulation of cancer cells by their environment contributes to tumorigenesis and drug response, though the extent to which the oncogenic state can alter a cell’s perception of its environment is not c...
www.biorxiv.org
December 17, 2025 at 3:10 PM
Summary: small fusion multimers are sufficient (tho not necessary!) to drive signaling and tumors. While condensates can form, they appear incidental. But if not condensates, then how do fusions signal from the cytoplasm? More to come here!
December 17, 2025 at 3:10 PM
5) Finally, a panel of other oncogenic RTK fusions shows that only few form condensates, and none show correlation between condensation and signaling at single-cell.
December 17, 2025 at 3:10 PM
4) Unexpectedly, even cytoplasmic *monomers* (const. active) can drive signaling and tumor formation, despite complete lack of multimerization that is essential for condensation.
December 17, 2025 at 3:10 PM
3) If condensates are dispensable, diffuse (non-condensing) ALK fusions should be able to signal and drive tumor growth. Indeed they can! Synthetic, cytoplasmic ALK dimers don’t condense but do signal, and also form tumors in mice.
December 17, 2025 at 3:10 PM
2) There is lots of active oncogene (pALK) in the diffuse phase, and when treated with ALK inhibitor, timescale of decay in the diffuse phase matches that of downstream signals, but decay in condensates is much slower.
December 17, 2025 at 3:10 PM
Evidence of dispensability?

1) EML4-ALK condensation is biphasic (highest at mid levels), but signaling increases monotonically w expression. Thus the strongest signaling is in cells with *no* condensates.
December 17, 2025 at 3:10 PM
The condensate (large foci) model suggests that condensates of fusions (e.g. EML4-ALK) are an essential organizer of signaling in the cyto, in the absence of membrane. Causality is unclear though because perturb's of condensates are often also perturb's of kinase activity.
December 17, 2025 at 3:10 PM
tagging first author @carolgyz.bsky.social. Congratulations Carol!!
December 17, 2025 at 2:26 AM
In sum, RTK fusions are simultaneously activators AND suppressors of mitogenic signaling. We expect future studies can exploit this suppressive behavior for biomimetic therapies designed to enhance killing & combat drug tolerance.
December 16, 2025 at 12:05 PM
Finally, synthetic optogenetic RTK fusions demonstrated the key principles: 1) Grb2 binding and sequestration could be decoupled from fusion signaling, and 2) Grb2 sequestration in the cyto is sufficient to desensitize cells to EGFR stim (without signaling).
December 16, 2025 at 12:05 PM
Targeted therapy (kinase inhibitors) releases Grb2 and relieves suppression. Potential therapeutic importance because drugs permit receptor signaling that promotes tolerance.
December 16, 2025 at 12:05 PM
Mechanism? Fusions sequester adapters like Grb2 in cyto and prevent translocation to active EGFR at membrane. Previously shown for EML4-ALK, below for TPM3-ROS, same for (almost) all fusions tested
December 16, 2025 at 12:05 PM
Main surprise: condensates (large foci) are *not* important for EGFR suppression. For EML4-ALK, condensates co-occur with suppression, but for most fusions -- no condensates.

See concurrent preprint for more surprises on the role of condensates in fusions.
www.biorxiv.org/content/10.6...
December 16, 2025 at 12:05 PM
Main finding: Across a panel of 10 oncogenic fusions and patient-derived cell lines, active fusions broadly suppressed the cell’s response to EGF.
December 16, 2025 at 12:05 PM
Previously we’d shown that EML4-ALK (onco-fusion) doesn’t only drive cancer signaling—it also suppresses EGFR, and suppression was reversed during therapy.

www.nature.com/articles/s41....

Do other fusions also suppress EGFR? Also EML4-ALK formed condensates -- are condensates important?
December 16, 2025 at 12:05 PM
Reposted by Lukasz Bugaj
Researcher back to at least 1912 have noticed that nephrons, the blood-filtering units of the kidney, tend to be born just as the nearest epithelial tubule begins to branch. This tree of tubes is called the 'ureteric bud epithelium' - the future urinary collecting system.
December 13, 2025 at 12:08 AM