Shawn Burgess
@burgesslab.bsky.social
1.9K followers 660 following 830 posts
zebrafish researcher, genetics and genomics of regeneration All posts are my personal opinions and do not reflect the position of the NIH or US government
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burgesslab.bsky.social
Some exciting news! NCBI has finished the annotation pipeline for our new #zebrafish reference sequence GRCz12tu:
www.ncbi.nlm.nih.gov/refseq/annot...

This is a big step up in data depth and quality and should be super helpful going forward.
Danio rerio Annotation ReportTwitterFacebookLinkedInGitHubNCBI Insights BlogTwitterFacebookYoutube
www.ncbi.nlm.nih.gov
burgesslab.bsky.social
Since a kid, it went right past my grandparents house in NH. Never had the right moment and I’m worried I probably missed the window of opportunity.
burgesslab.bsky.social
Got out on a stretch of MD’s Appalachian Trail this weekend.
burgesslab.bsky.social
More like Dawdle these days.
burgesslab.bsky.social
I can’t believe I pay for the Disney/Hulu/ESPN bundle and yet I can’t watch the Red Sox game without paying for some extra tier of ESPN to watch any actual sports someone might care about. This version of tv sucks
Reposted by Shawn Burgess
burgesslab.bsky.social
Yellow Berets as it were...
Reposted by Shawn Burgess
chrmosimann.bsky.social
...and: basic research with a disease model interface - all only possible by tremendous support from the NIH through R01, F31, T32, and other funding to all of us involved!

/fin
a little girl is sitting on a bed and saying `` thank you you da best '' .
ALT: a little girl is sitting on a bed and saying `` thank you you da best '' .
media.tenor.com
Reposted by Shawn Burgess
chrmosimann.bsky.social
Out @natcomms.nature.com:
our work on how the ❤️-supporting pericardium forms & acts in pediatric heart conditions.🎈🫀

Expanding our preprint & with our first HCR (thx to @thelovelylab.bsky.social!).

Congrats all! #devbio #zebrafish #CHD @cupediatrics.bsky.social @cudevbio.bsky.social
rdcu.be/eIJm5
burgesslab.bsky.social
Maybe graduate students and postdocs should be allowed to shop at the PX. Would help drive that message home.
burgesslab.bsky.social
Nice try google, but I don't care how many new buttons you put in different places, I'm not using your shitty ai.
Reposted by Shawn Burgess
mydennis.bsky.social
While I'm sad our cover submission wasn't selected for our recent human duplication paper, check out the super cool illustration created with @lazaroillustration.bsky.social ! Certainly, you will be seeing Dennis lab members running around with "fishman" t-shirts at future meetings, inspired by Ohno
lazaroillustration.bsky.social
"Fishman", proposal for a journal cover.
Commissioned by MY Dennis' lab @mydennis.bsky.social for a study focused on identifying human-specific gene duplications and their role in brain evolution using genomics and zebrafish as model. @dcsoto.bsky.social
#art #digitalart #sciart #fish
Illustration of a fishman creature with human limbs and fish head and tail, interacting with a DNA string
burgesslab.bsky.social
I love it! Just so people know what you are talking about:
Picture of the cover of the classic evolutionary text "Evolution by Gene Duplication" by S. Ohno.
Reposted by Shawn Burgess
aphillippy.bsky.social
How Robertsonian chromosomes can lead to miscarriage or trisomy explained in one great figure from Human Molecular Genetics (Strachan and Read) that I have referred to many times
Reposted by Shawn Burgess
needhibhalla.bsky.social
"Unraveling how [Robertsonian translocations] form is basic science, unlikely to have an immediate impact on anyone’s health or fertility, but it shows how new technologies continue to open doors, solving decades-old mysteries."
burgesslab.bsky.social
enirenberg.bsky.social
Wanna guess what happens if you do the adjustment? The association disappears.
jamanetwork.com/journals/jam...

Acetaminophen does not cause autism.
Results  In total, 185 909 children (7.49%) were exposed to acetaminophen during pregnancy. Crude absolute risks at 10 years of age for those not exposed vs those exposed to acetaminophen were 1.33% vs 1.53% for autism, 2.46% vs 2.87% for ADHD, and 0.70% vs 0.82% for intellectual disability. In models without sibling control, ever-use vs no use of acetaminophen during pregnancy was associated with marginally increased risk of autism (hazard ratio [HR], 1.05 [95% CI, 1.02-1.08]; risk difference [RD] at 10 years of age, 0.09% [95% CI, −0.01% to 0.20%]), ADHD (HR, 1.07 [95% CI, 1.05-1.10]; RD, 0.21% [95% CI, 0.08%-0.34%]), and intellectual disability (HR, 1.05 [95% CI, 1.00-1.10]; RD, 0.04% [95% CI, −0.04% to 0.12%]). To address unobserved confounding, matched full sibling pairs were also analyzed. Sibling control analyses found no evidence that acetaminophen use during pregnancy was associated with autism (HR, 0.98 [95% CI, 0.93-1.04]; RD, 0.02% [95% CI, −0.14% to 0.18%]), ADHD (HR, 0.98 [95% CI, 0.94-1.02]; RD, −0.02% [95% CI, −0.21% to 0.15%]), or intellectual disability (HR, 1.01 [95% CI, 0.92-1.10]; RD, 0% [95% CI, −0.10% to 0.13%]). Similarly, there was no evidence of a dose-response pattern in sibling control analyses. For example, for autism, compared with no use of acetaminophen, persons with low (<25th percentile), medium (25th-75th percentile), and high (>75th percentile) mean daily acetaminophen use had HRs of 0.85, 0.96, and 0.88, respectively.
Reposted by Shawn Burgess
acog.org
ACOG @acog.org · 15d
ACOG reaffirms that acetaminophen is safe for managing pain and fever during pregnancy. No reputable studies support suggestions like those in HHS’s recent announcement linking acetaminophen use in pregnancy to autism; in fact, high-quality studies show no such risk. https://bit.ly/47Wxc59
Reposted by Shawn Burgess
markhisted.org
I grew up in working-class Scranton PA, went on to do a PhD, worked at MIT with AI types, was NIH funded at universities, and have seen NIH from
the inside. I know how the US innovation system works.

Schulman, the author, doesn’t know what he’s talking about:
he doesn’t understand US science.
Reposted by Shawn Burgess
eara.eu
EARA @eara.eu · 16d
A new survey by the NCad has revealed that a substantial proportion of Dutch academics remain doubtful about the prospect of animal-free science.
🔗https://www.eara.eu/post/survey-reveals-overwhelming-scepticism-of-dutch-academics-towards-animal-free-science
#Netherlands #Policy #AnimalResearch
burgesslab.bsky.social
A near perfect human genome benchmark from the @aphillippy.bsky.social group
biorxiv-genomic.bsky.social
A complete diploid human genome benchmark for personalized genomics https://www.biorxiv.org/content/10.1101/2025.09.21.677443v1
burgesslab.bsky.social
Someone needs to make the gif
burgesslab.bsky.social
This is the most awesome label ever created.
burgesslab.bsky.social
@fish4walking.bsky.social

Seems like something that might interest you
dantheclamman.blog
One like, one clam fact
davidho.bsky.social
One like, one opinion about how to solve climate change.