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cklopp66.bsky.social
Christophe Klopp
@cklopp66.bsky.social
14 followers 15 following 4 posts
Chef de projet en bioinformatique. Intéressé par l'assemblage et l'annotation de génomes
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cklopp66.bsky.social
Christophe Klopp @cklopp66.bsky.social · Jun 4
dgenies.toulouse.inra.fr monthly jobs by job size. Interesting to see that the 5 to 200Mb genome sizes are less represented in the queries.
cklopp66.bsky.social
Christophe Klopp @cklopp66.bsky.social · Apr 23
You need help to select the best genome assembler? Check the updated version of www.biorxiv.org/content/10.1...
Benchmarking long-read genome assemblers for three sequencing protocols and three agricultural species
Today, long read technologies make it possible to produce telomere-to-telomere genome assemblies. These assemblies permit more accurate whole genome analyses, including on repeated regions. The genome...
www.biorxiv.org
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cklopp66.bsky.social
Christophe Klopp @cklopp66.bsky.social · Apr 8
Happy to share our latest preprint on autopolyploid genome assembly www.biorxiv.org/content/10.1...
Improving hifiasm haplotypes for autopolyploid genome assemblies using constraint programming
Actual versions of hifiasm often produce unbalanced haplotype contigs for autopolyploid genome assemblies. Adding a contraint on the distribution of proteins among haplotypes improves haplotype sizes ...
www.biorxiv.org
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Reposted by Christophe Klopp
inrae-migale.bsky.social
INRAE Migale @inrae-migale.bsky.social · Mar 7
Vous avez les bases mais souhaitez aller plus loin dans la programmation #Python ? Notre cycle de formation "Bioinformatique par la pratique" propose également ce module avancé à Jouy-en-Josas sur 2 jours (2 et 3 avril). 📝 Inscriptions et programme sur documents.migale.inrae.fr/trainings.html
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Reposted by Christophe Klopp
rachel-rpp.bsky.social
Rachel Rupp @rachel-rpp.bsky.social · Mar 7
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cklopp66.bsky.social
Christophe Klopp @cklopp66.bsky.social · Feb 19
www.biorxiv.org/content/10.1...
Benchmarking long-read genome assemblers for three sequencing protocols and three agricultural species
Today, long read technologies make it possible to produce telomere-to-telomere genome assemblies. These assemblies permit more accurate whole genome analyses, including on repeated regions. The genome...
www.biorxiv.org
1