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Conesa Lab

@conesalab.bsky.social

290 followers 230 following 23 posts

News from the Genomics of Gene Expression Lab at @i2sysbio.bsky.social @elcsic.bsky.social. Led by @anaconesa.bsky.social

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Conesa Lab @conesalab.bsky.social · Dec 4

🚨 SQANTI3 release alert!! 🚨 v5.3.0 is now LIVE!!! The new release includes better file compatibility, improved parallelization, a wrapper to run QC-filter-resque, and the first release of our newest tool, 👀 SQANTI-reads 🎉!
Thanks a lot to the whole team!
github.com/ConesaLab/SQ...

Release SQANTI 5.3.0 · ConesaLab/SQANTI3

This release include some new minor features, such as the inclusion of a Dockerfile of sqanti and a wrapper to execute all SQANTI steps at once. Also enhances compatibility for fastq.gz files in sq...

github.com

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Conesa Lab @conesalab.bsky.social · 6d

Europeans, assemble!!

The ConesaLab needs you to join us in a COST action.

Please, reach out if you can help us 🤝

Conesa Lab @conesalab.bsky.social · Sep 4

Tuesday was an amazing day.
The @i2sysbio.es organized the II Jornada de Colaboración Público-privada. We could meet the private sector and share our dreams and concerns with them.

www.i2sysbio.es/communicatio...

More than 70 people attend the 2nd Public-Private Collaboration Workshop organised by I2SysBio

<p><strong>The Institute of Integrative Systems Biology (I2SysBio), a joint centre of the CSIC and the University of Valencia, held its Second Public-Private Collaboration Workshop under the title &#3...

www.i2sysbio.es

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Conesa Lab @conesalab.bsky.social · Sep 1

Check out this interview by a local newspaper of @anaconesa.bsky.social and @carolinamonzo.bsky.social

A dive into the world of long reads transcriptomics and aging!

www.lasprovincias.es/sociedad/can...

La revolución de la secuenciación génica: una lupa sobre el envejecimiento y las enfermedades que nos afectan al cumplir años | Las Provincias

La secuenciación de lectura larga permite analizar el envejecimiento celular con precisión inédita, abriendo nuevas vías para comprender y retrasar este proceso

www.lasprovincias.es

Conesa Lab @conesalab.bsky.social · Aug 4

ChatGPT Plus
July at ConesaLab was packed! 🌞 From hosting Roc Martin, to poolside SQANTI3 chats, to teaching & presenting at LongTREC & ISMB/ECCB. Science, sun, & lots of RNA! ☀️🧬
Read the full story 👉 shorturl.at/UoE8y

July: From Valencia’s pool to Liverpool | Genomics of Gene Expression

As summer has finally arrived, things in the ConesaLab have taken a more relaxed tone. To begin the month, Roc Martin came to visit us to learn about long-read transcriptomics. Roc was a participant…

shorturl.at

Conesa Lab @conesalab.bsky.social · Jul 31

Hello everybody!
Great news from the lab, as Julen Santiago, one of our PhD Candidates, has done an amazing contribution to the SQANTI-verse. He has fixed tappAS! 🤩
Go to tappAS GitHub to download its latest relase and have fun!
github.com/ConesaLab/ta...

GitHub - ConesaLab/tappAS: This repository contains the source code for the tappAS application. See README for details.

This repository contains the source code for the tappAS application. See README for details. - ConesaLab/tappAS

github.com

Conesa Lab @conesalab.bsky.social · Jul 15

Checkout our latest blogpost, with a recap of @anaconesa.bsky.social amazing trip to reach Norwich!

conesalab.uv.es/longtrec_of_...

Sustainability on Action | Genomics of Gene Expression

It all began as the best ideas begin, with a simple yet effective What if… ? One day Ana asked us and herself, What if we were more active towards sustainability when travelling? How can I bring…

conesalab.uv.es

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Conesa Lab @conesalab.bsky.social · Jul 14

We are so glad to be part of a doctoral network as incredible as @longtrec.bsky.social Saving the world at the same time as enjoying science and friendship!

LongTREC @longtrec.bsky.social · Jul 13

A brief summary of the #LongCyclingForFuture bike trip that our LongTREC bikers have made from London to Norwich, passing via Cambridge. Join us to congratulate them on this adventure while raising awareness of the carbon footprint impact of scientific travel.
@anaconesa.bsky.social

Reposted by Conesa Lab

LongTREC @longtrec.bsky.social · Jul 14

📣 We have kicked off at the Earlham Institute, and everyone is to learn all about #LongReadsTranscriptomics at our #LongTREC Summer School.

Starting with an introduction of our network from @anaconesa.bsky.social and a quick getting to know our participants - both trainers and trainees!

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Reposted by Conesa Lab

LongTREC @longtrec.bsky.social · Jul 10

One of our doctoral candidates, @tianyuanliu.bsky.social, has designed a unique T-shirt for our LongTREC bikers —promoting both our project and our sustainability initiative.
#LongCyclingForScience
#Teamwork

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Reposted by Conesa Lab

LongTREC @longtrec.bsky.social · Jul 10

We’re kicking off a video series to showcase our network and its mission.
🎥 Watch @anaconesa.bsky.social introducing our project and why raising sustainability awareness in science is so important.

@i2sysbio.es @csic.es
#LongCyclingForScience 🚴🌎
#LongReadsTranscriptomics 🔬 #Outreach4Science ✍

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Reposted by Conesa Lab

Aureliano Bombarely @bombarelya.bsky.social · Jul 11

Last day at the @segenetica.bsky.social conference is dedicated to teaching and outreaching. Encarna Guillén, president of the Spanish human genetics society opens the session talking about genetics and medicine from an academic point of view. Spain doesn’t have a genetic specialist in medicine yet

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Conesa Lab @conesalab.bsky.social · Jul 10

The best active sustainability thread that you will see today. Putting things into action is what matters in the long run!

Congrats to @anaconesa.bsky.social and all the @longtrec.bsky.social for taking this step foward! 💪

LongTREC @longtrec.bsky.social · Jul 9

5 days to start our @longtrec.bsky.social Summer School hosted at the @earlhaminst.bsky.social and lead by @anaconesa.bsky.social
Follow us to know more about the course and other exciting news! 🤟

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Conesa Lab @conesalab.bsky.social · Jul 1

ConesaLab is heading to #BioHackathlon2025 in Berlin! We're updating long-read RNA-Seq benchmarks to reflect today’s tools & protocols—building on LRGASP and boosting reproducibility in transcriptomics. #LongReadRNA #Bioinformatics #ELIXIR
shorturl.at/C7aS6

BioHackathon Europe

Find out about the 2025 BioHackathon Europe, where hackers get together to make life science research easier.

shorturl.at

Conesa Lab @conesalab.bsky.social · Jun 3

🚀 SQANTI-verse Cards are here! ✨
If you want to get'em all, just follow these steps:
1️⃣ Use one of the SQANTI tools from our Github
2️⃣ Generate amazing data and publish your results
3️⃣ Tag us when you share your publication
We’ll send you a card!
8 are already available & more are coming 🌌
#SQANTIverse

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Reposted by Conesa Lab

Nature Reviews Genetics @natrevgenet.nature.com · Mar 28

Transcriptomics in the era of long-read sequencing go.nature.com/421ZTJm #Review by @carolinamonzo.bsky.social, Tianyuan Liu & @anaconesa.bsky.social @conesalab.bsky.social @i2sysbio.bsky.social

Transcriptomics in the era of long-read sequencing - Nature Reviews Genetics

Advances in long-read sequencing are driving the implementation of these technologies for transcriptome profiling. The authors provide a comprehensive guide to long-read RNA sequencing, including expe...

go.nature.com

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Conesa Lab @conesalab.bsky.social · Mar 28

So proud to see @carolinamonzo.bsky.social publishing yet another fantastic paper about transcriptomics. Check out her review that has just been published in Nature Review Genetics ;-)
shorturl.at/KeDAf

Transcriptomics in the era of long-read sequencing

Nature Reviews Genetics - Advances in long-read sequencing are driving the implementation of these technologies for transcriptome profiling. The authors provide a comprehensive guide to long-read...

www.nature.com

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Reposted by Conesa Lab

Carolina Monzó @carolinamonzo.bsky.social · Mar 28

It's finally out!!!! Our review on long-reads transcriptomics was published in @natrevgenet.bsky.social!! You can have a look at the paper here rdcu.be/efugl! We hope you like it 😀

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Reposted by Conesa Lab

Science News @scinews.bsky.social · Mar 25

Single-cell profiling of the human endometrium in polycystic ovary syndrome. #NatureMedicine

This study presents a comprehensive cellular atlas of the endometrium during the proliferative phase, comparing women with PCOS to healthy controls.

www.nature.com/articles/s41...

Single-cell profiling of the human endometrium in polycystic ovary syndrome - Nature Medicine

A transcriptomic atlas of the endometrium of women with polycystic ovary syndrome uncovers both disease signatures and potential therapeutic targets.

www.nature.com

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Reposted by Conesa Lab

Francisco M. Azcárate @fmazcarate.bsky.social · Mar 24

🐜🔍
Os presento Ant Hunters, un proyecto de ciencia ciudadana en el que puedes ayudar a investigadores del CSIC a estudiar su biodiversidad. Solo necesitas agua con azúcar y ganas de explorar.
👉 anthunters.github.io #CienciaCiudadana #Hormigas

anthunters.github.io

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Conesa Lab @conesalab.bsky.social · Mar 25

Introducing MOSim! 🚀 A powerful tool created by @carolinamonzo.bsky.social for simulating bulk & single-cell multi-omics data. Perfect for testing methods & exploring complex biological systems.
Available now on GitHub & Bioconductor. #MOSim #MultiOmics
github.com/ConesaLab/MO...

GitHub - ConesaLab/MOSim: Bulk and single-cell Multi-Omics ground truth Simulator in R

Bulk and single-cell Multi-Omics ground truth Simulator in R - ConesaLab/MOSim

github.com

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Conesa Lab @conesalab.bsky.social · Feb 12

Yesterday, to celebrate the day of the Woman in Science, our superstars @anaconesa.bsky.social and @carolinamonzo.bsky.social went to high-schools to showcase and inspire future generations of scientist. 👩‍🔬

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Conesa Lab @conesalab.bsky.social · Jan 27

Last week, @quiquevb.bsky.social went to Laussane in Swizterland to attend the Spatial Omics Data Analysis" hosted by @sib.swiss Swiss Institue of Bioinformatics (ELIXIR-CH) in collaboration with the ELIXIR Single-Cell Omics community. So much learnt in one week, amazing! 🧠

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Conesa Lab @conesalab.bsky.social · Jan 14

As well, we had our first strategy meeting for out 2025 social media strategy. Stay tuned, since changes are coming that will leave you wanting more of our amazing #ConesaBar 💃

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Conesa Lab @conesalab.bsky.social · Jan 14

Attention people of Bluesky! Today, we had a double celebration. Alejandro has gotten his paper published #ConesaLab 🧑‍🔬 genome.cshlp.org/content/earl...

Evaluation of strategies for evidence-driven genome annotation using long-read RNA-seq

An international, peer-reviewed genome sciences journal featuring outstanding original research that offers novel insights into the biology of all organisms

genome.cshlp.org

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Conesa Lab @conesalab.bsky.social · Dec 11

On Monday, @anaconesa.bsky.social gave a summary of this year at ConesaLab for the I2SysBio, and WOW! We end the year with 6 new positions, ready to rock and deliver next year. As well, many papers and tools have been published, like everybody's favorite SQANTI3 or scMaSigPro! Stay tuned for 2025! 🤩